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1HCY
Asym. Unit
Info
Asym.Unit (636 KB)
Biol.Unit 1 (626 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEXAMERIC HAEMOCYANIN FROM PANULIRUS INTERRUPTUS REFINED AT 3.2 ANGSTROMS RESOLUTION
Authors
:
A. Volbeda, W. G. J. Hol
Date
:
15 May 91 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Oxygen Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Volbeda, W. G. Hol
Crystal Structure Of Hexameric Haemocyanin From Panulirus Interruptus Refined At 3. 2 A Resolution.
J. Mol. Biol. V. 209 249 1989
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
3d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
3e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
3f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
6
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:167 , GLU A:428 , ARG A:451 , NAG A:659
BINDING SITE FOR RESIDUE NDG A 658
02
AC2
SOFTWARE
ARG A:451 , NDG A:658
BINDING SITE FOR RESIDUE NAG A 659
03
AC3
SOFTWARE
ASN B:167 , GLU B:428 , ARG B:451 , NAG B:659
BINDING SITE FOR RESIDUE NDG B 658
04
AC4
SOFTWARE
ARG B:451 , NDG B:658
BINDING SITE FOR RESIDUE NAG B 659
05
AC5
SOFTWARE
ASN C:167 , GLU C:428 , ARG C:451 , NAG C:659
BINDING SITE FOR RESIDUE NDG C 658
06
AC6
SOFTWARE
ARG C:451 , NDG C:658
BINDING SITE FOR RESIDUE NAG C 659
07
AC7
SOFTWARE
ASN D:167 , GLU D:428 , ARG D:451 , NAG D:659
BINDING SITE FOR RESIDUE NDG D 658
08
AC8
SOFTWARE
ARG D:451 , NDG D:658
BINDING SITE FOR RESIDUE NAG D 659
09
AC9
SOFTWARE
ASN E:167 , GLU E:428 , ARG E:451 , NAG E:659
BINDING SITE FOR RESIDUE NDG E 658
10
BC1
SOFTWARE
ARG E:451 , NDG E:658
BINDING SITE FOR RESIDUE NAG E 659
11
BC2
SOFTWARE
ASN F:167 , GLU F:428 , ARG F:451 , NAG F:659
BINDING SITE FOR RESIDUE NDG F 658
12
BC3
SOFTWARE
ARG F:451 , NDG F:658
BINDING SITE FOR RESIDUE NAG F 659
13
BC4
SOFTWARE
HIS A:194 , HIS A:198 , HIS A:224 , CU A:666
BINDING SITE FOR RESIDUE CU A 665
14
BC5
SOFTWARE
HIS A:344 , HIS A:348 , HIS A:384 , CU A:665
BINDING SITE FOR RESIDUE CU A 666
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: HEMOCYANIN_1 (A:183-202,B:183-202,C:183-202,D:18...)
2: HEMOCYANIN_2 (A:373-381,B:373-381,C:373-381,D:37...)
3: TYROSINASE_2 (A:377-388,B:377-388,C:377-388,D:37...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOCYANIN_1
PS00209
Arthropod hemocyanins / insect LSPs signature 1.
HCYA_PANIN
183-202
6
A:183-202
B:183-202
C:183-202
D:183-202
E:183-202
F:183-202
2
HEMOCYANIN_2
PS00210
Arthropod hemocyanins / insect LSPs signature 2.
HCYA_PANIN
373-381
6
A:373-381
B:373-381
C:373-381
D:373-381
E:373-381
F:373-381
3
TYROSINASE_2
PS00498
Tyrosinase and hemocyanins CuB-binding region signature.
HCYA_PANIN
377-388
6
A:377-388
B:377-388
C:377-388
D:377-388
E:377-388
F:377-388
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 18)
Info
All SCOP Domains
1a: SCOP_d1hcya2 (A:136-398)
1b: SCOP_d1hcyb2 (B:136-398)
1c: SCOP_d1hcyc2 (C:136-398)
1d: SCOP_d1hcyd2 (D:136-398)
1e: SCOP_d1hcye2 (E:136-398)
1f: SCOP_d1hcyf2 (F:136-398)
2a: SCOP_d1hcya1 (A:1-135)
2b: SCOP_d1hcyb1 (B:1-135)
2c: SCOP_d1hcyc1 (C:1-135)
2d: SCOP_d1hcyd1 (D:1-135)
2e: SCOP_d1hcye1 (E:1-135)
2f: SCOP_d1hcyf1 (F:1-135)
3a: SCOP_d1hcya3 (A:399-653)
3b: SCOP_d1hcyb3 (B:399-653)
3c: SCOP_d1hcyc3 (C:399-653)
3d: SCOP_d1hcyd3 (D:399-653)
3e: SCOP_d1hcye3 (E:399-653)
3f: SCOP_d1hcyf3 (F:399-653)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Di-copper centre-containing domain
(47)
Superfamily
:
Di-copper centre-containing domain
(47)
Family
:
Hemocyanin middle domain
(8)
Protein domain
:
Arthropod hemocyanin
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
1a
d1hcya2
A:136-398
1b
d1hcyb2
B:136-398
1c
d1hcyc2
C:136-398
1d
d1hcyd2
D:136-398
1e
d1hcye2
E:136-398
1f
d1hcyf2
F:136-398
Fold
:
Hemocyanin, N-terminal domain
(6)
Superfamily
:
Hemocyanin, N-terminal domain
(6)
Family
:
Hemocyanin, N-terminal domain
(6)
Protein domain
:
Hemocyanin, N-terminal domain
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
2a
d1hcya1
A:1-135
2b
d1hcyb1
B:1-135
2c
d1hcyc1
C:1-135
2d
d1hcyd1
D:1-135
2e
d1hcye1
E:1-135
2f
d1hcyf1
F:1-135
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arthropod hemocyanin, C-terminal domain
(6)
Protein domain
:
Arthropod hemocyanin, C-terminal domain
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
3a
d1hcya3
A:399-653
3b
d1hcyb3
B:399-653
3c
d1hcyc3
C:399-653
3d
d1hcyd3
D:399-653
3e
d1hcye3
E:399-653
3f
d1hcyf3
F:399-653
[
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]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1hcyA02 (A:170-397)
1b: CATH_1hcyB02 (B:170-397)
1c: CATH_1hcyC02 (C:170-397)
1d: CATH_1hcyD02 (D:170-397)
1e: CATH_1hcyE02 (E:170-397)
1f: CATH_1hcyF02 (F:170-397)
2a: CATH_1hcyA03 (A:398-427,A:455-532,A:552-653)
2b: CATH_1hcyB03 (B:398-427,B:455-532,B:552-653)
2c: CATH_1hcyC03 (C:398-427,C:455-532,C:552-653)
2d: CATH_1hcyD03 (D:398-427,D:455-532,D:552-653)
2e: CATH_1hcyE03 (E:398-427,E:455-532,E:552-653)
2f: CATH_1hcyF03 (F:398-427,F:455-532,F:552-653)
View:
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
di-copper center containing domain from catechol oxidase
(13)
Homologous Superfamily
:
Di-copper center containing domain from catechol oxidase
(13)
California spiny lobster (Panulirus interruptus)
(2)
1a
1hcyA02
A:170-397
1b
1hcyB02
B:170-397
1c
1hcyC02
C:170-397
1d
1hcyD02
D:170-397
1e
1hcyE02
E:170-397
1f
1hcyF02
F:170-397
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
E set domains
(6)
California spiny lobster (Panulirus interruptus)
(2)
2a
1hcyA03
A:398-427,A:455-532,A:552-653
2b
1hcyB03
B:398-427,B:455-532,B:552-653
2c
1hcyC03
C:398-427,C:455-532,C:552-653
2d
1hcyD03
D:398-427,D:455-532,D:552-653
2e
1hcyE03
E:398-427,E:455-532,E:552-653
2f
1hcyF03
F:398-427,F:455-532,F:552-653
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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