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1HC1
Asym. Unit
Info
Asym.Unit (648 KB)
Biol.Unit 1 (636 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEXAMERIC HAEMOCYANIN FROM PANULIRUS INTERRUPTUS REFINED AT 3.2 ANGSTROMS RESOLUTION
Authors
:
A. Volbeda, W. G. J. Hol
Date
:
15 May 91 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Oxygen Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Volbeda, W. G. Hol
Crystal Structure Of Hexameric Haemocyanin From Panulirus Interruptus Refined At 3. 2 A Resolution.
J. Mol. Biol. V. 209 249 1989
(for further references see the
PDB file header
)
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
1i: COPPER (II) ION (CUi)
1j: COPPER (II) ION (CUj)
1k: COPPER (II) ION (CUk)
1l: COPPER (II) ION (CUl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
12
Ligand/Ion
COPPER (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:194 , HIS A:198 , HIS A:224 , CU A:666
BINDING SITE FOR RESIDUE CU A 665
02
AC2
SOFTWARE
HIS A:344 , HIS A:348 , HIS A:384 , CU A:665
BINDING SITE FOR RESIDUE CU A 666
03
AC3
SOFTWARE
HIS B:194 , HIS B:198 , HIS B:224 , PHE B:371
BINDING SITE FOR RESIDUE CU B 665
04
AC4
SOFTWARE
HIS B:344 , HIS B:348 , HIS B:384
BINDING SITE FOR RESIDUE CU B 666
05
AC5
SOFTWARE
HIS C:194 , HIS C:198 , HIS C:224 , CU C:666
BINDING SITE FOR RESIDUE CU C 665
06
AC6
SOFTWARE
HIS C:344 , HIS C:348 , HIS C:384 , CU C:665
BINDING SITE FOR RESIDUE CU C 666
07
AC7
SOFTWARE
HIS D:194 , HIS D:198 , HIS D:224 , CU D:666
BINDING SITE FOR RESIDUE CU D 665
08
AC8
SOFTWARE
HIS D:344 , HIS D:348 , HIS D:384 , CU D:665
BINDING SITE FOR RESIDUE CU D 666
09
AC9
SOFTWARE
HIS E:194 , HIS E:198 , HIS E:224 , CU E:666
BINDING SITE FOR RESIDUE CU E 665
10
BC1
SOFTWARE
HIS E:344 , HIS E:348 , HIS E:384 , CU E:665
BINDING SITE FOR RESIDUE CU E 666
11
BC2
SOFTWARE
HIS F:194 , HIS F:198 , HIS F:224 , CU F:666
BINDING SITE FOR RESIDUE CU F 665
12
BC3
SOFTWARE
HIS F:344 , HIS F:348 , HIS F:384 , CU F:665
BINDING SITE FOR RESIDUE CU F 666
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: HEMOCYANIN_1 (A:183-202,B:183-202,C:183-202,D:18...)
2: HEMOCYANIN_2 (A:373-381,B:373-381,C:373-381,D:37...)
3: TYROSINASE_2 (A:377-388,B:377-388,C:377-388,D:37...)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOCYANIN_1
PS00209
Arthropod hemocyanins / insect LSPs signature 1.
HCYA_PANIN
183-202
6
A:183-202
B:183-202
C:183-202
D:183-202
E:183-202
F:183-202
2
HEMOCYANIN_2
PS00210
Arthropod hemocyanins / insect LSPs signature 2.
HCYA_PANIN
373-381
6
A:373-381
B:373-381
C:373-381
D:373-381
E:373-381
F:373-381
3
TYROSINASE_2
PS00498
Tyrosinase and hemocyanins CuB-binding region signature.
HCYA_PANIN
377-388
6
A:377-388
B:377-388
C:377-388
D:377-388
E:377-388
F:377-388
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1hc1a2 (A:136-398)
2a: SCOP_d1hc1a1 (A:5-135)
3a: SCOP_d1hc1a3 (A:399-653)
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)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Di-copper centre-containing domain
(47)
Superfamily
:
Di-copper centre-containing domain
(47)
Family
:
Hemocyanin middle domain
(8)
Protein domain
:
Arthropod hemocyanin
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
1a
d1hc1a2
A:136-398
Fold
:
Hemocyanin, N-terminal domain
(6)
Superfamily
:
Hemocyanin, N-terminal domain
(6)
Family
:
Hemocyanin, N-terminal domain
(6)
Protein domain
:
Hemocyanin, N-terminal domain
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
2a
d1hc1a1
A:5-135
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arthropod hemocyanin, C-terminal domain
(6)
Protein domain
:
Arthropod hemocyanin, C-terminal domain
(6)
Spiny lobster (Panulirus interruptus) [TaxId: 6735]
(2)
3a
d1hc1a3
A:399-653
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1hc1A02 (A:170-397)
1b: CATH_1hc1E02 (E:170-397)
1c: CATH_1hc1F02 (F:170-397)
1d: CATH_1hc1B02 (B:170-397)
1e: CATH_1hc1C02 (C:170-397)
1f: CATH_1hc1D02 (D:170-397)
2a: CATH_1hc1A03 (A:398-427,A:455-532,A:553-653)
2b: CATH_1hc1E03 (E:398-427,E:455-532,E:553-653)
2c: CATH_1hc1F03 (F:398-427,F:455-532,F:553-653)
2d: CATH_1hc1B03 (B:398-427,B:455-532,B:553-653)
2e: CATH_1hc1C03 (C:398-427,C:455-532,C:553-653)
2f: CATH_1hc1D03 (D:398-427,D:455-532,D:553-653)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
di-copper center containing domain from catechol oxidase
(13)
Homologous Superfamily
:
Di-copper center containing domain from catechol oxidase
(13)
California spiny lobster (Panulirus interruptus)
(2)
1a
1hc1A02
A:170-397
1b
1hc1E02
E:170-397
1c
1hc1F02
F:170-397
1d
1hc1B02
B:170-397
1e
1hc1C02
C:170-397
1f
1hc1D02
D:170-397
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
E set domains
(6)
California spiny lobster (Panulirus interruptus)
(2)
2a
1hc1A03
A:398-427,A:455-532,A:553-653
2b
1hc1E03
E:398-427,E:455-532,E:553-653
2c
1hc1F03
F:398-427,F:455-532,F:553-653
2d
1hc1B03
B:398-427,B:455-532,B:553-653
2e
1hc1C03
C:398-427,C:455-532,C:553-653
2f
1hc1D03
D:398-427,D:455-532,D:553-653
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain F
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