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1H8U
Biol. Unit 1
Info
Asym.Unit (48 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (23 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EOSINOPHIL MAJOR BASIC PROTEIN AT 1.8A: AN ATYPICAL LECTIN WITH A PARADIGM SHIFT IN SPECIFICITY
Authors
:
G. J. Swaminathan, A. J. Weaver, D. A. Loegering, J. L. Checkel, D. D. Leonidas, G. J. Gleich, K. R. Acharya
Date
:
15 Feb 01 (Deposition) - 17 Jul 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lectin, Eosinophil Granule Protein, Embp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Swaminathan, A. J. Weaver, D. A. Loegering, J. L. Checkel, D. D. Leonidas, G. J. Gleich, K. R. Acharya
Crystal Structure Of The Eosinophil Major Basic Protein At 1. 8A. An Atypical Lectin With A Paradigm Shift In Specificity
J. Biol. Chem. V. 276 26197 2001
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:90 , HIS A:91 , HIS A:106 , CYS A:107 , HOH A:2039 , HOH A:2071 , HOH A:2078 , HOH A:2082
BINDING SITE FOR RESIDUE SO4 A1118
2
AC2
SOFTWARE
ARG A:3 , ARG A:65 , ARG A:88 , HIS A:91 , ARG A:104 , HOH A:2076 , HOH A:2079 , HOH A:2080
BINDING SITE FOR RESIDUE SO4 A1119
3
AC3
SOFTWARE
ARG A:103 , ALA A:105 , HIS A:106 , ARG A:109 , HOH A:2063 , HOH A:2081 , HOH A:2082
BINDING SITE FOR RESIDUE SO4 A1120
4
AC4
SOFTWARE
ILE A:36 , ARG A:63 , HOH A:2084
BINDING SITE FOR RESIDUE SO4 A1121
5
AC5
SOFTWARE
LEU A:10 , THR A:12 , GLN A:15 , ARG A:110 , HOH A:2070 , HOH A:2085
BINDING SITE FOR RESIDUE SO4 A1122
6
AC9
SOFTWARE
ARG A:22 , PHE A:77 , ALA A:78 , HOH A:2086 , HOH A:2087 , PHE B:34
BINDING SITE FOR RESIDUE GOL A1123
7
BC1
SOFTWARE
SER A:14 , GLN A:15 , HOH A:2011 , ARG B:39 , ARG B:63 , HOH B:2026
BINDING SITE FOR RESIDUE GOL A1124
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_036401 (R74C, chain A, )
2: VAR_PRG2_HUMAN_CCDS7955_1_01 (R74C, chain A, )
3: VAR_060729 (Y101Y, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036401
R
179
C
PRG2_HUMAN
Unclassified
---
A
R
74
C
2
CancerSNP
VAR_PRG2_HUMAN_CCDS7955_1_01
*
R
179
C
PRG2_HUMAN
Disease (Colorectal cancer)
---
A
R
74
C
3
UniProt
VAR_060729
H
206
Y
PRG2_HUMAN
Polymorphism
536455
A
Y
101
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:4-116)
2: C_TYPE_LECTIN_1 (A:92-115)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
PRG2_HUMAN
109-221
1
A:4-116
-
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
PRG2_HUMAN
197-220
1
A:92-115
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1h8ua_ (A:)
1b: SCOP_d1h8ub_ (B:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Eosinophil major basic protein
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1h8ua_
A:
1b
d1h8ub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1h8uB00 (B:2-117)
1b: CATH_1h8uA00 (A:3-117)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1h8uB00
B:2-117
1b
1h8uA00
A:3-117
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (48 KB)
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