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1H8P
Asym. Unit
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Asym.Unit (41 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
BULL SEMINAL PLASMA PDC-109 FIBRONECTIN TYPE II MODULE
Authors
:
D. A. Wah, C. Fernandez-Tornero, J. J. Calvete, A. Romero
Date
:
14 Feb 01 (Deposition) - 12 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Phosphorylcholine-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Wah, C. Fernandez-Tornero, L. Sanz, A. Romero, J. J. Calvete
Sperm Coating Mechanism From The 1. 8 A Crystal Structure Of Pdc-109-Phosphorylcholine Complex
Structure V. 10 505 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHOCHOLINE (PCa)
1b: PHOSPHOCHOLINE (PCb)
1c: PHOSPHOCHOLINE (PCc)
1d: PHOSPHOCHOLINE (PCd)
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Label:
No.
Name
Count
Type
Full Name
1
PC
4
Ligand/Ion
PHOSPHOCHOLINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:87 , SER A:88 , MET A:89 , TRP A:93 , TYR A:100 , TRP A:106 , TYR A:108 , HOH A:2099
BINDING SITE FOR RESIDUE PC A1110
2
AC2
SOFTWARE
TYR A:30 , ARG A:31 , HIS A:41 , GLY A:42 , TYR A:54 , TRP A:58 , HOH A:2100
BINDING SITE FOR RESIDUE PC A1111
3
AC3
SOFTWARE
TYR B:30 , GLY B:42 , TRP B:47 , TYR B:54 , LYS B:78
BINDING SITE FOR RESIDUE PC B1110
4
AC4
SOFTWARE
ARG B:33 , TYR B:75 , GLY B:87 , TRP B:93 , TYR B:100 , TRP B:106 , HOH B:2105
BINDING SITE FOR RESIDUE PC B1111
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: FN2_2 (-|A:64-109,B:64-109)
2: FN2_1 (A:24-61,B:24-61|A:69-109,B:69-109)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN2_2
PS51092
Fibronectin type-II collagen-binding domain profile.
SFP1_BOVIN
44-88
89-134
2
-
A:64-109
B:64-109
2
FN2_1
PS00023
Fibronectin type-II collagen-binding domain signature.
SFP1_BOVIN
49-86
94-134
4
A:24-61
B:24-61
A:69-109
B:69-109
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1h8pa1 (A:22-67)
1b: SCOP_d1h8pa2 (A:68-109)
1c: SCOP_d1h8pb1 (B:22-67)
1d: SCOP_d1h8pb2 (B:68-109)
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Fibronectin type II module
(13)
Protein domain
:
PDC-109, collagen-binding type II domain
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1h8pa1
A:22-67
1b
d1h8pa2
A:68-109
1c
d1h8pb1
B:22-67
1d
d1h8pb2
B:68-109
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1h8pA02 (A:66-109)
1b: CATH_1h8pB02 (B:66-109)
1c: CATH_1h8pA01 (A:22-61)
1d: CATH_1h8pB01 (B:22-61)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Seminal Fluid Protein PDC-109 (Domain B)
(33)
Homologous Superfamily
:
[code=2.10.10.10, no name defined]
(13)
Bull (Bos taurus)
(1)
1a
1h8pA02
A:66-109
1b
1h8pB02
B:66-109
1c
1h8pA01
A:22-61
1d
1h8pB01
B:22-61
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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