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1H8L
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
DUCK CARBOXYPEPTIDASE D DOMAIN II IN COMPLEX WITH GEMSA
Authors
:
F. X. Gomis-Rueth, M. Coll, F. X. Aviles, J. Vendrell, L. D. Fricker
Date
:
09 Feb 01 (Deposition) - 08 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Carboxypeptidase, Hydrolase, Zinc-Dependent Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Aloy, V. Companys, J. Vendrell, F. X. Aviles, L. D. Fricker, M. Coll, F. X. Gomis-Rueth
The Crystal Structure Of The Inhibitor-Complexed Carboxypeptidase D Domain Ii And The Modeling Of Regulatory Carboxypeptidases
J. Biol. Chem. V. 276 16177 2001
(for further references see the
PDB file header
)
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Hetero Components
(6, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC... (GEMa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5a: SULFATE ION (SO4a)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GEM
1
Ligand/Ion
(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
SO4
1
Ligand/Ion
SULFATE ION
6
ZN
1
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:132 , ASN A:136 , ASN A:140 , TYR A:141 , ASP A:142 , ASP A:156 , NAG A:902
BINDING SITE FOR RESIDUE NAG A 901
2
AC2
SOFTWARE
ASP A:156 , NAG A:901 , BMA A:903
BINDING SITE FOR RESIDUE NAG A 902
3
AC3
SOFTWARE
NAG A:902 , HOH A:2187 , HOH A:2188
BINDING SITE FOR RESIDUE BMA A 903
4
AC4
SOFTWARE
ASN A:321 , THR A:323 , HOH A:2189 , HOH A:2191
BINDING SITE FOR RESIDUE NAG A 911
5
AC5
SOFTWARE
PHE A:309 , LEU A:311 , GLN A:375 , ASN A:377 , NAG A:922
BINDING SITE FOR RESIDUE NDG A 921
6
AC6
SOFTWARE
NDG A:921 , HOH A:2193
BINDING SITE FOR RESIDUE NAG A 922
7
AC7
SOFTWARE
ARG A:292 , ARG A:293 , HOH A:2056
BINDING SITE FOR RESIDUE SO4 A 998
8
AC8
SOFTWARE
HIS A:74 , GLU A:77 , HIS A:181 , GEM A:801
BINDING SITE FOR RESIDUE ZN A 999
9
AC9
SOFTWARE
HIS A:74 , GLU A:77 , ARG A:135 , ASN A:144 , ARG A:145 , HIS A:181 , GLY A:182 , ASN A:188 , ASP A:192 , GLY A:246 , TRP A:249 , TYR A:250 , VAL A:252 , GLU A:272 , ZN A:999
BINDING SITE FOR RESIDUE GEM A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_ZN_1 (A:65-87,-|A:65-87)
2: CARBOXYPEPT_ZN_2 (A:181-191,-|A:181-191)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_ZN_1
PS00132
Zinc carboxypeptidases, zinc-binding region 1 signature.
CBPD_LOPSP
62-84
1
A:65-87
CBPD_ANAPL
130-152
564-586
1
-
A:65-87
2
CARBOXYPEPT_ZN_2
PS00133
Zinc carboxypeptidases, zinc-binding region 2 signature.
CBPD_LOPSP
178-188
1
A:181-191
CBPD_ANAPL
260-270
680-690
1
-
A:181-191
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1h8la1 (A:305-383)
2a: SCOP_d1h8la2 (A:4-304)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Carboxypeptidase regulatory domain-like
(4)
Family
:
Carboxypeptidase regulatory domain
(3)
Protein domain
:
Carboxypeptidase D C-terminal domain
(2)
Crested duck (Lophonetta specularioides) [TaxId: 8836]
(2)
1a
d1h8la1
A:305-383
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Pancreatic carboxypeptidases
(77)
Protein domain
:
Carboxypeptidase D, catalytic domain
(2)
Crested duck (Lophonetta specularioides) [TaxId: 8836]
(2)
2a
d1h8la2
A:4-304
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1h8lA01 (A:4-304)
2a: CATH_1h8lA02 (A:305-383)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Crested duck (Lophonetta specularioides)
(2)
1a
1h8lA01
A:4-304
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1120, no name defined]
(4)
Crested duck (Lophonetta specularioides)
(2)
2a
1h8lA02
A:305-383
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Pfam Domains
(0, 0)
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (74 KB)
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