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1H83
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (169 KB)
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(1)
Title
:
STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH 1,8-DIAMINOOCTANE
Authors
:
C. Binda, A. Coda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Date
:
24 Jan 01 (Deposition) - 31 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Flavin-Dependent Amine Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Binda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Structural Bases For Inhibitor Binding And Catalysis In Polyamine Oxidase
Biochemistry V. 40 2766 2001
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: OCTANE 1,8-DIAMINE (DIAa)
1b: OCTANE 1,8-DIAMINE (DIAb)
1c: OCTANE 1,8-DIAMINE (DIAc)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
3a: ALPHA-D-FUCOSE (FCAa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIA
3
Ligand/Ion
OCTANE 1,8-DIAMINE
2
FAD
3
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FCA
1
Ligand/Ion
ALPHA-D-FUCOSE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:65 , TRP A:73 , ASN A:77 , TYR A:197 , NAG A:602 , HOH A:2222 , HOH A:2223
BINDING SITE FOR RESIDUE NAG A 601
02
AC2
SOFTWARE
NAG A:601
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
ASN B:65 , TRP B:73 , ASN B:77 , TYR B:197 , NAG B:602 , HOH B:2242
BINDING SITE FOR RESIDUE NAG B 601
04
AC4
SOFTWARE
ASN B:48 , NAG B:601
BINDING SITE FOR RESIDUE NAG B 602
05
AC5
SOFTWARE
ASN C:65 , TRP C:73 , ASN C:77 , TYR C:197 , NAG C:602 , FCA C:603 , HOH C:2265
BINDING SITE FOR RESIDUE NAG C 601
06
AC6
SOFTWARE
NAG C:601 , NAG C:602 , HOH C:2268
BINDING SITE FOR RESIDUE FCA C 603
07
AC7
SOFTWARE
SER B:255 , VAL B:256 , HOH B:2121 , NAG C:601 , FCA C:603 , MAN C:604 , HOH C:2267 , HOH C:2269
BINDING SITE FOR RESIDUE NAG C 602
08
AC8
SOFTWARE
NAG C:602 , MAN C:605 , HOH C:2269
BINDING SITE FOR RESIDUE MAN C 604
09
AC9
SOFTWARE
MAN C:604
BINDING SITE FOR RESIDUE MAN C 605
10
BC1
SOFTWARE
VAL A:10 , GLY A:11 , GLY A:13 , MET A:14 , SER A:15 , LEU A:34 , GLU A:35 , ALA A:36 , THR A:37 , GLY A:42 , ARG A:43 , MET A:44 , LEU A:56 , GLY A:57 , ALA A:58 , ASN A:59 , TRP A:60 , LYS A:235 , VAL A:237 , SER A:265 , LEU A:275 , TYR A:298 , PHE A:398 , TYR A:399 , THR A:402 , GLY A:429 , GLU A:430 , GLY A:438 , TYR A:439 , VAL A:440 , ALA A:443 , DIA A:590 , HOH A:2010 , HOH A:2018 , HOH A:2122 , HOH A:2193 , HOH A:2220 , HOH A:2221
BINDING SITE FOR RESIDUE FAD A 579
11
BC2
SOFTWARE
GLU A:62 , PHE A:89 , TYR A:169 , GLU A:170 , PHE A:171 , TYR A:298 , PHE A:403 , ASN A:437 , GLY A:438 , TYR A:439 , FAD A:579 , HOH A:2196 , HOH A:2197 , HOH A:2214
BINDING SITE FOR RESIDUE DIA A 590
12
BC3
SOFTWARE
VAL B:10 , GLY B:11 , GLY B:13 , MET B:14 , SER B:15 , LEU B:34 , GLU B:35 , ALA B:36 , GLY B:42 , ARG B:43 , LEU B:56 , GLY B:57 , ALA B:58 , ASN B:59 , TRP B:60 , LYS B:235 , VAL B:237 , SER B:265 , LEU B:275 , TYR B:298 , PHE B:398 , TYR B:399 , THR B:402 , PHE B:403 , GLY B:429 , GLU B:430 , GLY B:438 , TYR B:439 , VAL B:440 , ALA B:443 , DIA B:590 , HOH B:2011 , HOH B:2022 , HOH B:2125 , HOH B:2237 , HOH B:2238 , HOH B:2239 , HOH B:2240
BINDING SITE FOR RESIDUE FAD B 579
13
BC4
SOFTWARE
GLU B:62 , TYR B:169 , GLU B:170 , PHE B:171 , TYR B:298 , PHE B:403 , ASN B:437 , GLY B:438 , TYR B:439 , FAD B:579 , HOH B:2212 , HOH B:2241
BINDING SITE FOR RESIDUE DIA B 590
14
BC5
SOFTWARE
VAL C:10 , GLY C:11 , GLY C:13 , MET C:14 , SER C:15 , LEU C:34 , GLU C:35 , ALA C:36 , GLY C:42 , ARG C:43 , MET C:44 , LEU C:56 , GLY C:57 , ALA C:58 , ASN C:59 , TRP C:60 , LYS C:235 , VAL C:237 , SER C:265 , LEU C:275 , TYR C:298 , PHE C:398 , TYR C:399 , THR C:402 , PHE C:403 , GLY C:429 , GLU C:430 , GLY C:438 , TYR C:439 , VAL C:440 , ALA C:443 , DIA C:590 , HOH C:2002 , HOH C:2009 , HOH C:2148 , HOH C:2224 , HOH C:2261 , HOH C:2262 , HOH C:2263
BINDING SITE FOR RESIDUE FAD C 579
15
BC6
SOFTWARE
GLU C:62 , TYR C:169 , GLU C:170 , PHE C:171 , TYR C:298 , PHE C:403 , ASN C:437 , GLY C:438 , TYR C:439 , FAD C:579 , HOH C:2227 , HOH C:2264
BINDING SITE FOR RESIDUE DIA C 590
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1h83a2 (A:294-405)
1b: SCOP_d1h83b2 (B:294-405)
1c: SCOP_d1h83c2 (C:294-405)
2a: SCOP_d1h83a1 (A:5-293,A:406-463)
2b: SCOP_d1h83b1 (B:5-293,B:406-466)
2c: SCOP_d1h83c1 (C:5-293,C:406-466)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
1a
d1h83a2
A:294-405
1b
d1h83b2
B:294-405
1c
d1h83c2
C:294-405
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
2a
d1h83a1
A:5-293,A:406-463
2b
d1h83b1
B:5-293,B:406-466
2c
d1h83c1
C:5-293,C:406-466
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1h83A01 (A:5-87,A:187-292,A:412-463)
1b: CATH_1h83B01 (B:5-87,B:187-292,B:412-466)
1c: CATH_1h83C01 (C:5-87,C:187-292,C:412-466)
2a: CATH_1h83A02 (A:88-186,A:293-411)
2b: CATH_1h83B02 (B:88-186,B:293-411)
2c: CATH_1h83C02 (C:88-186,C:293-411)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Maize (Zea mays)
(5)
1a
1h83A01
A:5-87,A:187-292,A:412-463
1b
1h83B01
B:5-87,B:187-292,B:412-466
1c
1h83C01
C:5-87,C:187-292,C:412-466
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Maize (Zea mays)
(5)
2a
1h83A02
A:88-186,A:293-411
2b
1h83B02
B:88-186,B:293-411
2c
1h83C02
C:88-186,C:293-411
[
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Pfam Domains
(0, 0)
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