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1H81
Biol. Unit 2
Info
Asym.Unit (254 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (168 KB)
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(1)
Title
:
STRUCTURE OF POLYAMINE OXIDASE IN THE REDUCED STATE
Authors
:
C. Binda, A. Coda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Date
:
24 Jan 01 (Deposition) - 31 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Flavin-Dependent Amine Oxidase, Oxidoreductase
(Keyword Search:
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Reference
:
C. Binda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Structural Bases For Inhibitor Binding And Catalysis In Polyamine Oxidase
Biochemistry V. 40 2766 2001
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2a: ALPHA-D-FUCOSE (FCAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FCA
2
Ligand/Ion
ALPHA-D-FUCOSE
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(6, 6)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASN C:65 , TRP C:73 , ASN C:77 , TYR C:197 , NAG C:602 , FCA C:603 , HOH C:2255
BINDING SITE FOR RESIDUE NAG C 601
2
AC6
SOFTWARE
NAG C:601 , NAG C:602 , HOH C:2255
BINDING SITE FOR RESIDUE FCA C 603
3
AC7
SOFTWARE
SER B:255 , VAL B:256 , HOH B:2120 , NAG C:601 , FCA C:603 , MAN C:604 , HOH C:2255
BINDING SITE FOR RESIDUE NAG C 602
4
AC8
SOFTWARE
NAG C:602 , MAN C:605
BINDING SITE FOR RESIDUE MAN C 604
5
AC9
SOFTWARE
SER B:258 , MAN C:604
BINDING SITE FOR RESIDUE MAN C 605
6
BC3
SOFTWARE
VAL C:10 , GLY C:11 , GLY C:13 , MET C:14 , SER C:15 , LEU C:34 , GLU C:35 , ALA C:36 , THR C:37 , GLY C:42 , ARG C:43 , MET C:44 , LEU C:56 , GLY C:57 , ALA C:58 , ASN C:59 , TRP C:60 , GLU C:62 , LYS C:235 , VAL C:236 , VAL C:237 , SER C:265 , LEU C:275 , TYR C:298 , TRP C:393 , PHE C:398 , TYR C:399 , THR C:402 , PHE C:403 , GLY C:429 , GLU C:430 , GLY C:438 , TYR C:439 , VAL C:440 , ALA C:443 , HOH C:2008 , HOH C:2123 , HOH C:2213 , HOH C:2250 , HOH C:2251 , HOH C:2252 , HOH C:2253
BINDING SITE FOR RESIDUE FAD C 579
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1h81a2 (A:294-405)
1b: SCOP_d1h81b2 (B:294-405)
1c: SCOP_d1h81c2 (C:294-405)
2a: SCOP_d1h81a1 (A:5-293,A:406-463)
2b: SCOP_d1h81b1 (B:5-293,B:406-466)
2c: SCOP_d1h81c1 (C:5-293,C:406-466)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
1a
d1h81a2
A:294-405
1b
d1h81b2
B:294-405
1c
d1h81c2
C:294-405
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
2a
d1h81a1
A:5-293,A:406-463
2b
d1h81b1
B:5-293,B:406-466
2c
d1h81c1
C:5-293,C:406-466
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1h81A01 (A:5-87,A:187-292,A:412-463)
1b: CATH_1h81B01 (B:5-87,B:187-292,B:412-466)
1c: CATH_1h81C01 (C:5-87,C:187-292,C:412-466)
2a: CATH_1h81A02 (A:88-186,A:293-411)
2b: CATH_1h81B02 (B:88-186,B:293-411)
2c: CATH_1h81C02 (C:88-186,C:293-411)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Maize (Zea mays)
(5)
1a
1h81A01
A:5-87,A:187-292,A:412-463
1b
1h81B01
B:5-87,B:187-292,B:412-466
1c
1h81C01
C:5-87,C:187-292,C:412-466
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Maize (Zea mays)
(5)
2a
1h81A02
A:88-186,A:293-411
2b
1h81B02
B:88-186,B:293-411
2c
1h81C02
C:88-186,C:293-411
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Pfam Domains
(0, 0)
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (254 KB)
Header - Asym.Unit
Biol.Unit 1 (166 KB)
Header - Biol.Unit 1
Biol.Unit 2 (168 KB)
Header - Biol.Unit 2
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