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1H6K
Asym. Unit
Info
Asym.Unit (426 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (147 KB)
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(1)
Title
:
NUCLEAR CAP BINDING COMPLEX
Authors
:
C. Mazza, M. Ohno, A. Segref, I. W. Mattaj, S. Cusack
Date
:
18 Jun 01 (Deposition) - 13 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,X,Y,Z
Biol. Unit 1: A,X (1x)
Biol. Unit 2: B,Y (1x)
Biol. Unit 3: C,Z (1x)
Keywords
:
M7G Cap, Cap-Binding-Complex, Rnp Domain, Mif4G Domain, Rna Maturation, Rna Export, Crystal Structure, Nuclear Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Mazza, M. Ohno, A. Segref, I. W. Mattaj, S. Cusack
Crystal Structure Of The Human Nuclear Cap Binding Complex
Mol. Cell V. 8 383 2001
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RRM (X:40-118,Y:40-117,Z:40-118)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
NCBP2_HUMAN
40-118
3
X:40-118
Y:40-117
Z:40-118
[
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Exons
(24, 72)
Info
All Exons
Exon 1.3c (X:38-87 (gaps) | Y:38-87 (gaps) | ...)
Exon 1.3g (X:87-118 | Y:87-117 | Z:87-118)
Exon 2.2 (A:27-41 | B:26-41 | C:26-41)
Exon 2.3 (A:42-75 | B:42-75 | C:42-75)
Exon 2.4 (A:75-127 | B:75-127 | C:75-127)
Exon 2.5 (A:128-163 | B:128-163 | C:128-163)
Exon 2.6 (A:164-204 | B:164-204 | C:164-204)
Exon 2.7 (A:204-227 | B:204-227 | C:204-227)
Exon 2.8 (A:228-299 | B:228-299 | C:228-299)
Exon 2.9b (A:300-332 | B:300-332 | C:300-332)
Exon 2.10 (A:332-353 | B:332-353 | C:332-353)
Exon 2.11 (A:354-390 | B:354-390 | C:354-390)
Exon 2.12 (A:391-412 | B:391-412 | C:391-412)
Exon 2.13 (A:412-433 | B:412-433 | C:412-433)
Exon 2.14 (A:433-458 | B:433-458 | C:433-458)
Exon 2.15 (A:458-493 | B:458-493 | C:458-493)
Exon 2.16 (A:493-526 | B:493-526 | C:493-527)
Exon 2.17 (A:539-568 | B:539-568 | C:538-568)
Exon 2.18 (A:568-599 | B:568-599 | C:568-599)
Exon 2.19 (A:600-634 | B:600-634 | C:600-634)
Exon 2.20b (A:634-665 | B:634-664 | C:634-665)
Exon 2.21 (A:690-715 | B:689-715 | C:688-715)
Exon 2.22a (A:716-753 | B:716-753 | C:716-753)
Exon 2.23a (A:754-790 | B:754-790 | C:754-790)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.3c
02: Boundary 1.3c/1.3g
03: Boundary 1.3g/1.3p
04: Boundary 2.1a/2.2
05: Boundary 2.2/2.3
06: Boundary 2.3/2.4
07: Boundary 2.4/2.5
08: Boundary 2.5/2.6
09: Boundary 2.6/2.7
10: Boundary 2.7/2.8
11: Boundary 2.8/2.9b
12: Boundary 2.9b/2.10
13: Boundary 2.10/2.11
14: Boundary 2.11/2.12
15: Boundary 2.12/2.13
16: Boundary 2.13/2.14
17: Boundary 2.14/2.15
18: Boundary 2.15/2.16
19: Boundary 2.16/2.17
20: Boundary 2.17/2.18
21: Boundary 2.18/2.19
22: Boundary 2.19/2.20b
23: Boundary 2.20b/2.21
24: Boundary 2.21/2.22a
25: Boundary 2.22a/2.23a
26: Boundary 2.23a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000321256
1a
ENSE00001056985
chr3:
196669468-196669297
172
NCBP2_HUMAN
1-26
26
0
-
-
1.3c
ENST00000321256
3c
ENSE00001786473
chr3:
196666303-196666122
182
NCBP2_HUMAN
27-87
61
3
X:38-87 (gaps)
Y:38-87 (gaps)
Z:38-87 (gaps)
50
50
50
1.3g
ENST00000321256
3g
ENSE00001618834
chr3:
196664519-196664381
139
NCBP2_HUMAN
87-133
47
3
X:87-118
Y:87-117
Z:87-118
32
31
32
1.3p
ENST00000321256
3p
ENSE00001929594
chr3:
196663953-196662278
1676
NCBP2_HUMAN
134-156
23
0
-
-
2.1a
ENST00000375147
1a
ENSE00002154723
chr9:
100395908-100396197
290
NCBP1_HUMAN
1-12
12
0
-
-
2.2
ENST00000375147
2
ENSE00001610908
chr9:
100403076-100403164
89
NCBP1_HUMAN
12-41
30
3
A:27-41
B:26-41
C:26-41
15
16
16
2.3
ENST00000375147
3
ENSE00001626181
chr9:
100403844-100403944
101
NCBP1_HUMAN
42-75
34
3
A:42-75
B:42-75
C:42-75
34
34
34
2.4
ENST00000375147
4
ENSE00001686031
chr9:
100405486-100405642
157
NCBP1_HUMAN
75-127
53
3
A:75-127
B:75-127
C:75-127
53
53
53
2.5
ENST00000375147
5
ENSE00001730187
chr9:
100407399-100407506
108
NCBP1_HUMAN
128-163
36
3
A:128-163
B:128-163
C:128-163
36
36
36
2.6
ENST00000375147
6
ENSE00001803534
chr9:
100407893-100408014
122
NCBP1_HUMAN
164-204
41
3
A:164-204
B:164-204
C:164-204
41
41
41
2.7
ENST00000375147
7
ENSE00001693192
chr9:
100409774-100409843
70
NCBP1_HUMAN
204-227
24
3
A:204-227
B:204-227
C:204-227
24
24
24
2.8
ENST00000375147
8
ENSE00001662271
chr9:
100410290-100410505
216
NCBP1_HUMAN
228-299
72
3
A:228-299
B:228-299
C:228-299
72
72
72
2.9b
ENST00000375147
9b
ENSE00001610051
chr9:
100412785-100412882
98
NCBP1_HUMAN
300-332
33
3
A:300-332
B:300-332
C:300-332
33
33
33
2.10
ENST00000375147
10
ENSE00001738969
chr9:
100413592-100413655
64
NCBP1_HUMAN
332-353
22
3
A:332-353
B:332-353
C:332-353
22
22
22
2.11
ENST00000375147
11
ENSE00001767060
chr9:
100416080-100416190
111
NCBP1_HUMAN
354-390
37
3
A:354-390
B:354-390
C:354-390
37
37
37
2.12
ENST00000375147
12
ENSE00001626418
chr9:
100417162-100417226
65
NCBP1_HUMAN
391-412
22
3
A:391-412
B:391-412
C:391-412
22
22
22
2.13
ENST00000375147
13
ENSE00001803324
chr9:
100417984-100418046
63
NCBP1_HUMAN
412-433
22
3
A:412-433
B:412-433
C:412-433
22
22
22
2.14
ENST00000375147
14
ENSE00001648128
chr9:
100418293-100418367
75
NCBP1_HUMAN
433-458
26
3
A:433-458
B:433-458
C:433-458
26
26
26
2.15
ENST00000375147
15
ENSE00001763342
chr9:
100420922-100421025
104
NCBP1_HUMAN
458-493
36
3
A:458-493
B:458-493
C:458-493
36
36
36
2.16
ENST00000375147
16
ENSE00001592843
chr9:
100423228-100423350
123
NCBP1_HUMAN
493-534
42
3
A:493-526
B:493-526
C:493-527
34
34
35
2.17
ENST00000375147
17
ENSE00001800577
chr9:
100424324-100424426
103
NCBP1_HUMAN
534-568
35
3
A:539-568
B:539-568
C:538-568
30
30
31
2.18
ENST00000375147
18
ENSE00001802313
chr9:
100425236-100425329
94
NCBP1_HUMAN
568-599
32
3
A:568-599
B:568-599
C:568-599
32
32
32
2.19
ENST00000375147
19
ENSE00001714911
chr9:
100426622-100426725
104
NCBP1_HUMAN
600-634
35
3
A:600-634
B:600-634
C:600-634
35
35
35
2.20b
ENST00000375147
20b
ENSE00001728703
chr9:
100429045-100429159
115
NCBP1_HUMAN
634-672
39
3
A:634-665
B:634-664
C:634-665
32
31
32
2.21
ENST00000375147
21
ENSE00000926499
chr9:
100431128-100431256
129
NCBP1_HUMAN
673-715
43
3
A:690-715
B:689-715
C:688-715
26
27
28
2.22a
ENST00000375147
22a
ENSE00000926500
chr9:
100431875-100431988
114
NCBP1_HUMAN
716-753
38
3
A:716-753
B:716-753
C:716-753
38
38
38
2.23a
ENST00000375147
23a
ENSE00001465914
chr9:
100433368-100436030
2663
NCBP1_HUMAN
754-790
37
3
A:754-790
B:754-790
C:754-790
37
37
37
[
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SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1h6ka1 (A:27-290)
1b: SCOP_d1h6ka2 (A:291-480)
1c: SCOP_d1h6ka3 (A:481-790)
1d: SCOP_d1h6kb1 (B:26-290)
1e: SCOP_d1h6kb2 (B:291-480)
1f: SCOP_d1h6kb3 (B:481-790)
1g: SCOP_d1h6kc1 (C:26-290)
1h: SCOP_d1h6kc2 (C:291-480)
1i: SCOP_d1h6kc3 (C:481-790)
2a: SCOP_d1h6kx_ (X:)
2b: SCOP_d1h6ky_ (Y:)
2c: SCOP_d1h6kz_ (Z:)
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)
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(
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(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
MIF4G domain-like
(17)
Protein domain
:
CBP80, 80KDa nuclear cap-binding protein
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1h6ka1
A:27-290
1b
d1h6ka2
A:291-480
1c
d1h6ka3
A:481-790
1d
d1h6kb1
B:26-290
1e
d1h6kb2
B:291-480
1f
d1h6kb3
B:481-790
1g
d1h6kc1
C:26-290
1h
d1h6kc2
C:291-480
1i
d1h6kc3
C:481-790
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
CBP20, 20KDa nuclear cap-binding protein
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1h6kx_
X:
2b
d1h6ky_
Y:
2c
d1h6kz_
Z:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1h6kZ00 (Z:38-118)
1b: CATH_1h6kX00 (X:38-118)
1c: CATH_1h6kY00 (Y:38-117)
2a: CATH_1h6kA01 (A:27-244)
2b: CATH_1h6kB01 (B:27-244)
2c: CATH_1h6kB03 (B:489-788)
2d: CATH_1h6kC03 (C:489-788)
2e: CATH_1h6kA03 (A:489-790)
2f: CATH_1h6kC01 (C:27-244)
2g: CATH_1h6kA02 (A:309-478)
2h: CATH_1h6kB02 (B:309-478)
2i: CATH_1h6kC02 (C:309-478)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1h6kZ00
Z:38-118
1b
1h6kX00
X:38-118
1c
1h6kY00
Y:38-117
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.180, no name defined]
(12)
Human (Homo sapiens)
(10)
2a
1h6kA01
A:27-244
2b
1h6kB01
B:27-244
2c
1h6kB03
B:489-788
2d
1h6kC03
C:489-788
2e
1h6kA03
A:489-790
2f
1h6kC01
C:27-244
2g
1h6kA02
A:309-478
2h
1h6kB02
B:309-478
2i
1h6kC02
C:309-478
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Pfam Domains
(0, 0)
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all PFAM domains
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