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1H6C
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1 (261 KB)
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(1)
Title
:
OXIDIZED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS COMPLEXED WITH SUCCINATE
Authors
:
D. Nurizzo, E. N. Baker
Date
:
11 Jun 01 (Deposition) - 28 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Protein Translocation, Periplasmic Oxidoreductase, Signal Peptide, Ligand Binding, Crystal Structure
(Keyword Search:
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Reference
:
D. Nurizzo, D. Halbig, G. Sprenger, E. N. Baker
Crystal Structures Of The Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis And Its Complexes With Bound Ligands
Biochemistry V. 40 13857 2001
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SIN
4
Ligand/Ion
SUCCINIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:62 , PRO A:63 , THR A:65 , PRO A:66 , ALA A:67 , GLY A:68 , ARG A:69 , GLY A:90 , LEU A:91 , GLY A:92 , LYS A:93 , TYR A:94 , SER A:116 , GLY A:117 , LYS A:121 , TYR A:139 , ILE A:157 , LEU A:158 , PRO A:159 , ASN A:160 , HIS A:163 , GLU A:180 , LYS A:181 , ARG A:209 , ALA A:248 , TRP A:251 , ARG A:252 , TYR A:269 , TYR A:348 , SIN A:600 , HOH A:2014 , HOH A:2147 , HOH A:2191 , HOH A:2318 , HOH A:2319 , HOH A:2320 , HOH A:2324
BINDING SITE FOR RESIDUE NDP A 500
2
AC2
SOFTWARE
LYS A:181 , ILE A:266 , TYR A:269 , PHE A:369 , NDP A:500 , HOH A:2240 , HOH A:2321 , HOH A:2322 , HOH A:2323 , HOH A:2324
BINDING SITE FOR RESIDUE SIN A 600
3
AC3
SOFTWARE
VAL B:62 , PRO B:63 , THR B:65 , PRO B:66 , ALA B:67 , GLY B:68 , ARG B:69 , GLY B:90 , LEU B:91 , GLY B:92 , LYS B:93 , TYR B:94 , SER B:116 , GLY B:117 , ASN B:118 , LYS B:121 , TYR B:139 , ILE B:157 , LEU B:158 , PRO B:159 , ASN B:160 , LEU B:162 , HIS B:163 , GLU B:180 , LYS B:181 , ARG B:209 , ALA B:248 , TRP B:251 , ARG B:252 , TYR B:269 , TYR B:348 , SIN B:600 , HOH B:2067 , HOH B:2135
BINDING SITE FOR RESIDUE NDP B 500
4
AC4
SOFTWARE
LYS B:181 , TYR B:269 , TYR B:348 , PHE B:369 , NDP B:500 , GOL B:700 , HOH B:2055 , HOH B:2067
BINDING SITE FOR RESIDUE SIN B 600
5
AC5
SOFTWARE
TYR A:348 , HOH A:2176 , HOH A:2325 , HOH A:2326
BINDING SITE FOR RESIDUE GOL A 700
6
AC6
SOFTWARE
ILE B:75 , LYS B:93 , ASP B:240 , PHE B:369 , SIN B:600 , HOH B:2056 , HOH B:2136
BINDING SITE FOR RESIDUE GOL B 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1h6ca2 (A:213-374)
1b: SCOP_d1h6cb2 (B:213-374)
2a: SCOP_d1h6ca1 (A:53-212,A:375-433)
2b: SCOP_d1h6cb1 (B:53-212,B:375-433)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Glucose 6-phosphate dehydrogenase-like
(25)
Protein domain
:
Glucose-fructose oxidoreductase
(8)
Zymomonas mobilis [TaxId: 542]
(8)
1a
d1h6ca2
A:213-374
1b
d1h6cb2
B:213-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glucose-fructose oxidoreductase, N-terminal domain
(8)
Zymomonas mobilis [TaxId: 542]
(8)
2a
d1h6ca1
A:53-212,A:375-433
2b
d1h6cb1
B:53-212,B:375-433
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1h6cA02 (A:213-366,A:398-433)
1b: CATH_1h6cB02 (B:213-366,B:398-433)
2a: CATH_1h6cA01 (A:74-212,A:367-397)
2b: CATH_1h6cB01 (B:74-212,B:367-397)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Zymomonas mobilis. Organism_taxid: 542.
(7)
1a
1h6cA02
A:213-366,A:398-433
1b
1h6cB02
B:213-366,B:398-433
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Zymomonas mobilis. Organism_taxid: 542.
(7)
2a
1h6cA01
A:74-212,A:367-397
2b
1h6cB01
B:74-212,B:367-397
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Pfam Domains
(0, 0)
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (261 KB)
Header - Biol.Unit 1
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