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1H6C
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (261 KB)
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(1)
Title
:
OXIDIZED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS COMPLEXED WITH SUCCINATE
Authors
:
D. Nurizzo, E. N. Baker
Date
:
11 Jun 01 (Deposition) - 28 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Protein Translocation, Periplasmic Oxidoreductase, Signal Peptide, Ligand Binding, Crystal Structure
(Keyword Search:
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Reference
:
D. Nurizzo, D. Halbig, G. Sprenger, E. N. Baker
Crystal Structures Of The Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis And Its Complexes With Bound Ligands
Biochemistry V. 40 13857 2001
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SIN
2
Ligand/Ion
SUCCINIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:62 , PRO A:63 , THR A:65 , PRO A:66 , ALA A:67 , GLY A:68 , ARG A:69 , GLY A:90 , LEU A:91 , GLY A:92 , LYS A:93 , TYR A:94 , SER A:116 , GLY A:117 , LYS A:121 , TYR A:139 , ILE A:157 , LEU A:158 , PRO A:159 , ASN A:160 , HIS A:163 , GLU A:180 , LYS A:181 , ARG A:209 , ALA A:248 , TRP A:251 , ARG A:252 , TYR A:269 , TYR A:348 , SIN A:600 , HOH A:2014 , HOH A:2147 , HOH A:2191 , HOH A:2318 , HOH A:2319 , HOH A:2320 , HOH A:2324
BINDING SITE FOR RESIDUE NDP A 500
2
AC2
SOFTWARE
LYS A:181 , ILE A:266 , TYR A:269 , PHE A:369 , NDP A:500 , HOH A:2240 , HOH A:2321 , HOH A:2322 , HOH A:2323 , HOH A:2324
BINDING SITE FOR RESIDUE SIN A 600
3
AC3
SOFTWARE
VAL B:62 , PRO B:63 , THR B:65 , PRO B:66 , ALA B:67 , GLY B:68 , ARG B:69 , GLY B:90 , LEU B:91 , GLY B:92 , LYS B:93 , TYR B:94 , SER B:116 , GLY B:117 , ASN B:118 , LYS B:121 , TYR B:139 , ILE B:157 , LEU B:158 , PRO B:159 , ASN B:160 , LEU B:162 , HIS B:163 , GLU B:180 , LYS B:181 , ARG B:209 , ALA B:248 , TRP B:251 , ARG B:252 , TYR B:269 , TYR B:348 , SIN B:600 , HOH B:2067 , HOH B:2135
BINDING SITE FOR RESIDUE NDP B 500
4
AC4
SOFTWARE
LYS B:181 , TYR B:269 , TYR B:348 , PHE B:369 , NDP B:500 , GOL B:700 , HOH B:2055 , HOH B:2067
BINDING SITE FOR RESIDUE SIN B 600
5
AC5
SOFTWARE
TYR A:348 , HOH A:2176 , HOH A:2325 , HOH A:2326
BINDING SITE FOR RESIDUE GOL A 700
6
AC6
SOFTWARE
ILE B:75 , LYS B:93 , ASP B:240 , PHE B:369 , SIN B:600 , HOH B:2056 , HOH B:2136
BINDING SITE FOR RESIDUE GOL B 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1h6ca2 (A:213-374)
1b: SCOP_d1h6cb2 (B:213-374)
2a: SCOP_d1h6ca1 (A:53-212,A:375-433)
2b: SCOP_d1h6cb1 (B:53-212,B:375-433)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Glucose 6-phosphate dehydrogenase-like
(25)
Protein domain
:
Glucose-fructose oxidoreductase
(8)
Zymomonas mobilis [TaxId: 542]
(8)
1a
d1h6ca2
A:213-374
1b
d1h6cb2
B:213-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glucose-fructose oxidoreductase, N-terminal domain
(8)
Zymomonas mobilis [TaxId: 542]
(8)
2a
d1h6ca1
A:53-212,A:375-433
2b
d1h6cb1
B:53-212,B:375-433
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1h6cA02 (A:213-366,A:398-433)
1b: CATH_1h6cB02 (B:213-366,B:398-433)
2a: CATH_1h6cA01 (A:74-212,A:367-397)
2b: CATH_1h6cB01 (B:74-212,B:367-397)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Zymomonas mobilis. Organism_taxid: 542.
(7)
1a
1h6cA02
A:213-366,A:398-433
1b
1h6cB02
B:213-366,B:398-433
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Zymomonas mobilis. Organism_taxid: 542.
(7)
2a
1h6cA01
A:74-212,A:367-397
2b
1h6cB01
B:74-212,B:367-397
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (138 KB)
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Header - Biol.Unit 1
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