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1H5W
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (537 KB)
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(1)
Title
:
2.1A BACTERIOPHAGE PHI-29 CONNECTOR
Authors
:
A. Guasch, J. Pous, B. Ibarra, F. X. Gomis-Ruth, J. M. Valpuesta, N. Sous J. L. Carrascosa, M. Coll
Date
:
28 May 01 (Deposition) - 13 Feb 02 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (4x)
Keywords
:
Virus, Connector, Portal, Sh3-Like, Helix Bundle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Guasch, J. Pous, B. Ibarra, F. X. Gomis-Ruth, J. M. Valpuesta, N. Sousa, J. L. Carrascosa, M. Coll
Detailed Architecture Of A Dna Translocating Machine: The High-Resolution Structure Of The Bacteriophage Phi29 Connector Particle.
J. Mol. Biol. V. 315 663 2002
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
1d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
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No.
Name
Count
Type
Full Name
1
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:214 , ASN A:215 , TRP A:218 , GLU C:220
binding site for residue MPD A 401
2
AC2
SOFTWARE
GLU A:220 , LYS B:214 , ASN B:215 , TRP B:218
binding site for residue MPD B 401
3
AC3
SOFTWARE
ASN A:29 , PHE C:128 , PRO C:129 , PRO C:132
binding site for residue MPD C 401
4
AC4
SOFTWARE
GLU B:220 , HOH B:610 , LYS C:214 , ASN C:215 , TRP C:218
binding site for residue MPD C 402
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1h5wa_ (A:)
1b: SCOP_d1h5wb_ (B:)
1c: SCOP_d1h5wc_ (C:)
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Upper collar protein gp10 (connector protein)
(4)
Superfamily
:
Upper collar protein gp10 (connector protein)
(4)
Family
:
Upper collar protein gp10 (connector protein)
(4)
Protein domain
:
Upper collar protein gp10 (connector protein)
(4)
Bacteriophage phi-29 [TaxId: 10756]
(4)
1a
d1h5wa_
A:
1b
d1h5wb_
B:
1c
d1h5wc_
C:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1h5wB03 (B:158-202)
1b: CATH_1h5wC03 (C:158-202)
1c: CATH_1h5wA03 (A:158-202)
2a: CATH_1h5wB01 (B:16-35,B:130-157,B:203-226)
2b: CATH_1h5wA01 (A:17-35,A:130-157,A:203-226)
2c: CATH_1h5wC01 (C:18-35,C:130-157,C:203-226)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Crambin
(36)
Homologous Superfamily
:
Bacteriophage PHI-29 conector. Domain 3
(4)
Bacteriophage phi-29. Organism_taxid: 10756.
(1)
1a
1h5wB03
B:158-202
1b
1h5wC03
C:158-202
1c
1h5wA03
A:158-202
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Serum Albumin; Chain A, Domain 1
(74)
Homologous Superfamily
:
[code=1.10.246.30, no name defined]
(4)
Bacteriophage phi-29. Organism_taxid: 10756.
(1)
2a
1h5wB01
B:16-35,B:130-157,B:203-226
2b
1h5wA01
A:17-35,A:130-157,A:203-226
2c
1h5wC01
C:18-35,C:130-157,C:203-226
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Pfam Domains
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Asym.Unit (144 KB)
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