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1H5H
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III (44-56% DOSE)
Authors
:
G. I. Berglund, G. H. Carlsson, J. Hajdu, A. T. Smith, H. Szoke, A. Henriksen
Date
:
22 May 01 (Deposition) - 21 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Peroxidase, Horseradish, Compound Iii, Oxyperoxidase, X-Ray Induced Reduction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. I. Berglund, G. H. Carlsson, A. T. Smith, H. Szoke, A. Henriksen, J. Hajdu
The Catalytic Pathway Of Horseradish Peroxidase At High Resolution
Nature V. 417 463 2002
(for further references see the
PDB file header
)
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: HYDROGEN PEROXIDE (PEOa)
4b: HYDROGEN PEROXIDE (PEOb)
4c: HYDROGEN PEROXIDE (PEOc)
4d: HYDROGEN PEROXIDE (PEOd)
4e: HYDROGEN PEROXIDE (PEOe)
4f: HYDROGEN PEROXIDE (PEOf)
4g: HYDROGEN PEROXIDE (PEOg)
4h: HYDROGEN PEROXIDE (PEOh)
4i: HYDROGEN PEROXIDE (PEOi)
4j: HYDROGEN PEROXIDE (PEOj)
4k: HYDROGEN PEROXIDE (PEOk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
2
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
PEO
11
Ligand/Ion
HYDROGEN PEROXIDE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:65 , PHE A:77 , ARG A:302
BINDING SITE FOR RESIDUE ACT A 400
02
AC2
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:2105
BINDING SITE FOR RESIDUE CA A 401
03
AC3
SOFTWARE
THR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230
BINDING SITE FOR RESIDUE CA A 402
04
AC4
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:73 , PRO A:139 , ALA A:140 , PRO A:141 , PHE A:152 , LEU A:166 , GLY A:169 , HIS A:170 , PHE A:172 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , SER A:246 , HOH A:2224 , HOH A:2363 , HOH A:2364
BINDING SITE FOR RESIDUE HEM A 350
05
AC5
SOFTWARE
ARG A:283 , HOH A:2365
BINDING SITE FOR RESIDUE PEO A 501
06
AC6
SOFTWARE
PRO A:193 , ARG A:206 , HOH A:2235
BINDING SITE FOR RESIDUE PEO A 502
07
AC7
SOFTWARE
ASN A:47 , ASP A:50 , ASN A:57 , THR A:288 , LEU A:290 , PEO A:504 , HOH A:2070
BINDING SITE FOR RESIDUE PEO A 503
08
AC8
SOFTWARE
ASN A:57 , ARG A:62 , THR A:63 , ASP A:66 , LEU A:290 , PEO A:503
BINDING SITE FOR RESIDUE PEO A 504
09
AC9
SOFTWARE
GLY A:122 , THR A:291 , GLY A:292 , HOH A:2366
BINDING SITE FOR RESIDUE PEO A 505
10
BC1
SOFTWARE
THR A:5 , ASP A:8
BINDING SITE FOR RESIDUE PEO A 506
11
BC2
SOFTWARE
LEU A:2 , ASN A:286 , HOH A:2367
BINDING SITE FOR RESIDUE PEO A 507
12
BC3
SOFTWARE
ARG A:264 , HOH A:2311
BINDING SITE FOR RESIDUE PEO A 508
13
BC4
SOFTWARE
LEU A:133 , ASN A:137 , ASN A:154 , HOH A:2368 , HOH A:2369
BINDING SITE FOR RESIDUE PEO A 509
14
BC5
SOFTWARE
HOH A:2370
BINDING SITE FOR RESIDUE PEO A 510
15
BC6
SOFTWARE
ALA A:71 , ASN A:72 , GLN A:176 , ARG A:178 , PHE A:179 , HOH A:2371
BINDING SITE FOR RESIDUE PEO A 511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:1-305)
2: PEROXIDASE_2 (A:33-44)
3: PEROXIDASE_1 (A:162-172)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1A_ARMRU
31-335
1
A:1-305
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1A_ARMRU
63-74
1
A:33-44
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1A_ARMRU
192-202
1
A:162-172
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1h5ha_ (A:)
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)
(
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Folds
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Horseradish (Armoracia rusticana) [TaxId: 3704]
(29)
1a
d1h5ha_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1h5hA01 (A:2-138,A:285-305)
2a: CATH_1h5hA02 (A:139-284)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Horseradish (Armoracia rusticana)
(23)
1a
1h5hA01
A:2-138,A:285-305
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Horseradish (Armoracia rusticana)
(23)
2a
1h5hA02
A:139-284
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (65 KB)
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