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1H4P
Biol. Unit 2
Info
Asym.Unit (159 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXO-1,3-BETA GLUCANSE FROM SACCHAROMYCES CEREVISIAE
Authors
:
A. D. Ferguson
Date
:
11 May 01 (Deposition) - 02 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Glucan Degradation, Hydrolyase, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Taylor, A. D. Ferguson, J. J. M. Bergeron, D. Y. Thomas
The Er Protein Folding Sensor Udp-Glucose Glycoprotein:Glucosyltransferase Modifies Substrates Distant To Local Changes In Glycoprotein Conformation.
Nat. Struct. Mol. Biol. V. 11 128 2004
[
close entry info
]
Hetero Components
(5, 15)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GOL
5
Ligand/Ion
GLYCEROL
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
GLU B:116 , GLY B:161 , TRP B:162 , ASN B:165 , NAG B:1455
BINDING SITE FOR RESIDUE NAG B1454
02
BC8
SOFTWARE
GLN B:158 , NAG B:1454 , MAN B:1456
BINDING SITE FOR RESIDUE NAG B1455
03
BC9
SOFTWARE
ALA A:379 , NAG B:1455 , MAN B:1457 , MAN B:1458 , MAN B:1461
BINDING SITE FOR RESIDUE MAN B1456
04
CC1
SOFTWARE
MAN B:1456 , MAN B:1461
BINDING SITE FOR RESIDUE MAN B1457
05
CC2
SOFTWARE
TYR A:380 , MAN B:1456 , BMA B:1459 , BMA B:1460
BINDING SITE FOR RESIDUE MAN B1458
06
CC3
SOFTWARE
TYR A:380 , SER B:154 , MAN B:1458 , BMA B:1460
BINDING SITE FOR RESIDUE BMA B1459
07
CC4
SOFTWARE
MAN B:1458 , BMA B:1459 , MAN B:1461
BINDING SITE FOR RESIDUE BMA B1460
08
CC5
SOFTWARE
MAN B:1456 , MAN B:1457 , BMA B:1460
BINDING SITE FOR RESIDUE MAN B1461
09
CC6
SOFTWARE
ASN B:325 , NDG B:1463 , HOH B:2161
BINDING SITE FOR RESIDUE NAG B1462
10
CC7
SOFTWARE
NAG B:1462
BINDING SITE FOR RESIDUE NDG B1463
11
DC2
SOFTWARE
ASN A:121 , GLN A:125 , TYR A:411 , GLN A:422 , HOH A:2227 , GLN B:117 , ASN B:121 , GOL B:1452
BINDING SITE FOR RESIDUE GOL A1452
12
DC3
SOFTWARE
GLU B:65 , TYR B:67 , HIS B:175 , ASN B:186 , TYR B:297 , GLU B:334 , TRP B:409 , HOH B:2166
BINDING SITE FOR RESIDUE GOL B1449
13
DC4
SOFTWARE
TRP B:288 , GLY B:289 , VAL B:290 , HIS B:328 , TRP B:329 , HOH B:2004 , HOH B:2135
BINDING SITE FOR RESIDUE GOL B1450
14
DC5
SOFTWARE
THR A:435 , ARG A:437 , HOH A:2222 , ASP B:398 , GLU B:401 , THR B:435 , ARG B:437 , HOH B:2225
BINDING SITE FOR RESIDUE GOL B1451
15
DC6
SOFTWARE
GLN A:117 , ASN A:121 , GOL A:1452 , ASN B:121 , GLN B:125 , TYR B:411 , GLN B:422 , HOH B:2205 , HOH B:2226
BINDING SITE FOR RESIDUE GOL B1452
16
DC7
SOFTWARE
HOH B:2124 , HOH B:2174 , HOH B:2227
BINDING SITE FOR RESIDUE GOL B1453
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F5 (B:225-234)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F5
PS00659
Glycosyl hydrolases family 5 signature.
EXG1_YEAST
225-234
1
-
B:225-234
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1h4pa_ (A:)
1b: SCOP_d1h4pb_ (B:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Exo-beta-(1,3)-glucanase
(5)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1h4pa_
A:
1b
d1h4pb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1h4pA00 (A:41-448)
1b: CATH_1h4pB00 (B:41-448)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Baker's yeast (Saccharomyces cerevisiae)
(5)
1a
1h4pA00
A:41-448
1b
1h4pB00
B:41-448
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (159 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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