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1H4P
Biol. Unit 1
Info
Asym.Unit (159 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXO-1,3-BETA GLUCANSE FROM SACCHAROMYCES CEREVISIAE
Authors
:
A. D. Ferguson
Date
:
11 May 01 (Deposition) - 02 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Glucan Degradation, Hydrolyase, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Taylor, A. D. Ferguson, J. J. M. Bergeron, D. Y. Thomas
The Er Protein Folding Sensor Udp-Glucose Glycoprotein:Glucosyltransferase Modifies Substrates Distant To Local Changes In Glycoprotein Conformation.
Nat. Struct. Mol. Biol. V. 11 128 2004
[
close entry info
]
Hetero Components
(4, 19)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
GOL
4
Ligand/Ion
GLYCEROL
3
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC9 (SOFTWARE)
17: CC2 (SOFTWARE)
18: CC3 (SOFTWARE)
19: CC8 (SOFTWARE)
20: CC9 (SOFTWARE)
21: DC1 (SOFTWARE)
22: DC2 (SOFTWARE)
23: DC5 (SOFTWARE)
24: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:116 , GLY A:161 , TRP A:162 , ASN A:165 , NAG A:1454
BINDING SITE FOR RESIDUE NAG A1453
02
AC2
SOFTWARE
GLN A:158 , NAG A:1453 , BMA A:1455 , BMA A:1461
BINDING SITE FOR RESIDUE NAG A1454
03
AC3
SOFTWARE
NAG A:1454 , BMA A:1456 , MAN A:1457 , BMA A:1461 , BMA A:1462
BINDING SITE FOR RESIDUE BMA A1455
04
AC4
SOFTWARE
BMA A:1455 , BMA A:1462
BINDING SITE FOR RESIDUE BMA A1456
05
AC5
SOFTWARE
BMA A:1455 , BMA A:1458 , MAN A:1459 , MAN A:1460 , BMA A:1461
BINDING SITE FOR RESIDUE MAN A1457
06
AC6
SOFTWARE
MAN A:1457 , MAN A:1459
BINDING SITE FOR RESIDUE BMA A1458
07
AC7
SOFTWARE
MAN A:1457 , BMA A:1458
BINDING SITE FOR RESIDUE MAN A1459
08
AC8
SOFTWARE
MAN A:1457 , BMA A:1461 , BMA A:1462
BINDING SITE FOR RESIDUE MAN A1460
09
AC9
SOFTWARE
NAG A:1454 , BMA A:1455 , MAN A:1457 , MAN A:1460 , BMA A:1462
BINDING SITE FOR RESIDUE BMA A1461
10
BC1
SOFTWARE
BMA A:1455 , BMA A:1456 , MAN A:1460 , BMA A:1461
BINDING SITE FOR RESIDUE BMA A1462
11
BC2
SOFTWARE
ASN A:275 , ASN A:325 , NAG A:1464
BINDING SITE FOR RESIDUE NAG A1463
12
BC3
SOFTWARE
ASN A:275 , ASP A:278 , NAG A:1463 , MAN A:1465 , HOH A:2228
BINDING SITE FOR RESIDUE NAG A1464
13
BC4
SOFTWARE
ASN A:275 , TYR A:276 , ASP A:279 , NAG A:1464 , MAN A:1466 , BMA A:1467
BINDING SITE FOR RESIDUE MAN A1465
14
BC5
SOFTWARE
TYR A:276 , ASP A:279 , MAN A:1465
BINDING SITE FOR RESIDUE MAN A1466
15
BC6
SOFTWARE
PRO A:273 , MAN A:1465
BINDING SITE FOR RESIDUE BMA A1467
16
BC9
SOFTWARE
ALA A:379 , NAG B:1455 , MAN B:1457 , MAN B:1458 , MAN B:1461
BINDING SITE FOR RESIDUE MAN B1456
17
CC2
SOFTWARE
TYR A:380 , MAN B:1456 , BMA B:1459 , BMA B:1460
BINDING SITE FOR RESIDUE MAN B1458
18
CC3
SOFTWARE
TYR A:380 , SER B:154 , MAN B:1458 , BMA B:1460
BINDING SITE FOR RESIDUE BMA B1459
19
CC8
SOFTWARE
TRP A:288 , GLY A:289 , VAL A:290 , HIS A:328 , TRP A:329 , HOH A:2224 , HOH A:2225
BINDING SITE FOR RESIDUE GOL A1449
20
CC9
SOFTWARE
GLU A:65 , TYR A:67 , HIS A:175 , ASN A:186 , TRP A:409 , HOH A:2158
BINDING SITE FOR RESIDUE GOL A1450
21
DC1
SOFTWARE
ASP A:45 , GLU A:283 , SER A:327 , HIS A:328 , ARG A:403 , HOH A:2226
BINDING SITE FOR RESIDUE GOL A1451
22
DC2
SOFTWARE
ASN A:121 , GLN A:125 , TYR A:411 , GLN A:422 , HOH A:2227 , GLN B:117 , ASN B:121 , GOL B:1452
BINDING SITE FOR RESIDUE GOL A1452
23
DC5
SOFTWARE
THR A:435 , ARG A:437 , HOH A:2222 , ASP B:398 , GLU B:401 , THR B:435 , ARG B:437 , HOH B:2225
BINDING SITE FOR RESIDUE GOL B1451
24
DC6
SOFTWARE
GLN A:117 , ASN A:121 , GOL A:1452 , ASN B:121 , GLN B:125 , TYR B:411 , GLN B:422 , HOH B:2205 , HOH B:2226
BINDING SITE FOR RESIDUE GOL B1452
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F5 (A:225-234)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F5
PS00659
Glycosyl hydrolases family 5 signature.
EXG1_YEAST
225-234
1
A:225-234
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1h4pa_ (A:)
1b: SCOP_d1h4pb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Exo-beta-(1,3)-glucanase
(5)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1h4pa_
A:
1b
d1h4pb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1h4pA00 (A:41-448)
1b: CATH_1h4pB00 (B:41-448)
View:
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(
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Baker's yeast (Saccharomyces cerevisiae)
(5)
1a
1h4pA00
A:41-448
1b
1h4pB00
B:41-448
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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