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1H47
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
STRUCTURES OF MECP SYNTHASE IN COMPLEX WITH (I) CMP AND (II) CMP AND PRODUCT
Authors
:
L. E. Kemp, M. S. Alphey, C. S. Bond, W. N. Hunter
Date
:
24 Feb 03 (Deposition) - 22 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Synthase, Isoprenoid, Lyase, Isoprene Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. E. Kemp, M. S. Alphey, C. S. Bond, M. Ferguson, S. Hecht, A. Bacher, W. Eisenreich, F. Rohdich, W. N. Hunter
The Identification Of Isoprenoids That Bind In The Intersubunit Cavity Of Escherichia Coli 2C-Methyl-D-Erythritol-2, 4-Cyclodiphosphate Synthase By Complementary Biophysical Methods
Acta Crystallogr. , Sect. D V. 61 45 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: CYTIDINE-5'-MONOPHOSPHATE (C5Pa)
1b: CYTIDINE-5'-MONOPHOSPHATE (C5Pb)
1c: CYTIDINE-5'-MONOPHOSPHATE (C5Pc)
1d: CYTIDINE-5'-MONOPHOSPHATE (C5Pd)
1e: CYTIDINE-5'-MONOPHOSPHATE (C5Pe)
1f: CYTIDINE-5'-MONOPHOSPHATE (C5Pf)
2a: GERANYL DIPHOSPHATE (GPPa)
2b: GERANYL DIPHOSPHATE (GPPb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C5P
6
Ligand/Ion
CYTIDINE-5'-MONOPHOSPHATE
2
GPP
2
Ligand/Ion
GERANYL DIPHOSPHATE
3
ZN
6
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:8 , HIS A:10 , HIS A:42
BINDING SITE FOR RESIDUE ZN A1158
02
AC2
SOFTWARE
ASP B:8 , HIS B:10 , HIS B:42
BINDING SITE FOR RESIDUE ZN B1158
03
AC3
SOFTWARE
ASP C:8 , HIS C:10 , HIS C:42
BINDING SITE FOR RESIDUE ZN C1158
04
AC4
SOFTWARE
ASP D:8 , HIS D:10 , HIS D:42
BINDING SITE FOR RESIDUE ZN D1158
05
AC5
SOFTWARE
ASP E:8 , HIS E:10 , HIS E:42
BINDING SITE FOR RESIDUE ZN E1158
06
AC6
SOFTWARE
ASP F:8 , HIS F:10 , HIS F:42 , HOH F:2037
BINDING SITE FOR RESIDUE ZN F1158
07
AC7
SOFTWARE
PHE A:7 , GLY A:138 , PHE A:139 , ARG A:142 , GLU A:149 , PHE B:7 , GLY B:138 , PHE B:139 , THR B:140 , ARG B:142 , GLU B:149 , HOH B:2022 , PHE C:7 , GLY C:138 , PHE C:139 , THR C:140 , ARG C:142 , GLU C:149 , ARG D:142
BINDING SITE FOR RESIDUE GPP A1157
08
AC8
SOFTWARE
ALA A:100 , PRO A:103 , LYS A:104 , MET A:105 , LEU A:106 , ALA A:131 , THR A:132 , THR A:133 , ASP C:56 , GLY C:58 , HOH C:2010
BINDING SITE FOR RESIDUE C5P A1159
09
AC9
SOFTWARE
ASP A:56 , GLY A:58 , HOH A:2003 , ALA B:100 , PRO B:103 , LYS B:104 , MET B:105 , LEU B:106 , ALA B:131 , THR B:132 , THR B:133
BINDING SITE FOR RESIDUE C5P B1157
10
BC1
SOFTWARE
ASP B:56 , GLY B:58 , HOH B:2008 , ALA C:100 , PRO C:103 , LYS C:104 , MET C:105 , LEU C:106 , ALA C:131 , THR C:132 , THR C:133 , GLU C:135
BINDING SITE FOR RESIDUE C5P C1157
11
BC2
SOFTWARE
ARG B:142 , PHE D:7 , GLY D:138 , PHE D:139 , ARG D:142 , GLU D:149 , PHE E:7 , GLY E:138 , PHE E:139 , ARG E:142 , GLU E:149 , PHE F:7 , GLY F:138 , PHE F:139 , ARG F:142 , GLU F:149
BINDING SITE FOR RESIDUE GPP D1157
12
BC3
SOFTWARE
ALA D:100 , PRO D:103 , LYS D:104 , MET D:105 , LEU D:106 , ALA D:131 , THR D:132 , THR D:133 , GLU D:135 , ASP F:56 , GLY F:58 , HOH F:2008
BINDING SITE FOR RESIDUE C5P D1159
13
BC4
SOFTWARE
ASP D:56 , GLY D:58 , HOH D:2005 , ALA E:100 , PRO E:103 , LYS E:104 , MET E:105 , LEU E:106 , ALA E:131 , THR E:132 , THR E:133
BINDING SITE FOR RESIDUE C5P E1157
14
BC5
SOFTWARE
ASP E:56 , GLY E:58 , HOH E:2007 , ALA F:100 , PRO F:103 , LYS F:104 , MET F:105 , LEU F:106 , ALA F:131 , THR F:132 , THR F:133
BINDING SITE FOR RESIDUE C5P F1157
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ISPF (A:35-50,B:35-50,C:35-50,D:35-50,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ISPF
PS01350
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature.
ISPF_ECOLI
35-50
6
A:35-50
B:35-50
C:35-50
D:35-50
E:35-50
F:35-50
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1h47a_ (A:)
1b: SCOP_d1h47b_ (B:)
1c: SCOP_d1h47c_ (C:)
1d: SCOP_d1h47d_ (D:)
1e: SCOP_d1h47e_ (E:)
1f: SCOP_d1h47f_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
IpsF-like
(56)
Family
:
IpsF-like
(35)
Protein domain
:
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
(27)
Escherichia coli [TaxId: 562]
(13)
1a
d1h47a_
A:
1b
d1h47b_
B:
1c
d1h47c_
C:
1d
d1h47d_
D:
1e
d1h47e_
E:
1f
d1h47f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1h47A00 (A:0-156)
1b: CATH_1h47C00 (C:0-156)
1c: CATH_1h47D00 (D:0-156)
1d: CATH_1h47F00 (F:0-156)
1e: CATH_1h47B00 (B:-1-156)
1f: CATH_1h47E00 (E:-1-156)
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(
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.50, no name defined]
(46)
Escherichia coli. Organism_taxid: 511693. Strain: bl21.
(3)
1a
1h47A00
A:0-156
1b
1h47C00
C:0-156
1c
1h47D00
D:0-156
1d
1h47F00
F:0-156
1e
1h47B00
B:-1-156
1f
1h47E00
E:-1-156
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain F
Asymmetric Unit 1
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Asym.Unit (157 KB)
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