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1H41
Asym. Unit
Info
Asym.Unit (271 KB)
Biol.Unit 1 (264 KB)
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(1)
Title
:
PSEUDOMONAS CELLULOSA E292A ALPHA-D-GLUCURONIDASE MUTANT COMPLEXED WITH ALDOTRIURONIC ACID
Authors
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
Date
:
25 Sep 02 (Deposition) - 01 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Glucuronidase, Structure, (Alpha-Beta)8 Barrel, Glycoside Hydrolase, Glucuronic Acid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagy, D. Nurizzo, G. J. Davies, P. Biely, J. H. Lakey, D. N. Bolam, H. J. Gilbert
The Alpha-Glucuronidase, Glca67A, Of Cellvibrio Japonicus Utilizes The Carboxylate And Methyl Groups Of Aldobiouronic Acid As Important Substrate Recognition Determinants
J. Biol. Chem. V. 278 20286 2003
[
close entry info
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Hetero Components
(3, 40)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
1f: COBALT (II) ION (COf)
1g: COBALT (II) ION (COg)
1h: COBALT (II) ION (COh)
1i: COBALT (II) ION (COi)
1j: COBALT (II) ION (COj)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-O-METHYL-ALPHA-D-GLUCURONIC ACID (GCVa)
3b: 4-O-METHYL-ALPHA-D-GLUCURONIC ACID (GCVb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
10
Ligand/Ion
COBALT (II) ION
2
EDO
28
Ligand/Ion
1,2-ETHANEDIOL
3
GCV
2
Ligand/Ion
4-O-METHYL-ALPHA-D-GLUCURONIC ACID
[
close Hetero Component info
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Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:160 , GLU A:168 , ARG A:169 , VAL A:210 , ASN A:211 , LYS A:288 , ARG A:325 , LYS A:360 , ASP A:365 , GLU A:393 , HOH A:2405 , HOH A:2489 , HOH A:2804 , HOH A:2805
BINDING SITE FOR RESIDUE GCV A1713
02
AC2
SOFTWARE
TRP B:160 , GLU B:168 , ARG B:169 , VAL B:210 , ASN B:211 , LYS B:288 , ARG B:325 , LYS B:360 , ASP B:365 , GLU B:393 , HOH B:2436 , HOH B:2489 , HOH B:2816 , HOH B:2817
BINDING SITE FOR RESIDUE GCV B1713
03
AC3
SOFTWARE
THR A:629
BINDING SITE FOR RESIDUE CO A1728
04
AC4
SOFTWARE
GLY A:7 , ASN A:452 , PRO A:457 , GLN A:460 , HOH A:2540 , HOH A:2725
BINDING SITE FOR RESIDUE CO A1729
05
AC5
SOFTWARE
ASN A:607 , TRP A:609 , ARG A:673
BINDING SITE FOR RESIDUE CO A1730
06
AC6
SOFTWARE
ASN A:162 , ASN A:164 , TRP A:702 , HOH A:2823
BINDING SITE FOR RESIDUE CO A1731
07
AC7
SOFTWARE
GLN A:153 , HIS A:154 , HIS A:438 , HOH A:2824
BINDING SITE FOR RESIDUE CO A1732
08
AC8
SOFTWARE
THR B:629
BINDING SITE FOR RESIDUE CO B1728
09
AC9
SOFTWARE
GLY B:7 , ASN B:452 , PRO B:457 , GLN B:460 , HOH B:2543 , HOH B:2731
BINDING SITE FOR RESIDUE CO B1729
10
BC1
SOFTWARE
ASN B:162 , ASN B:164 , TRP B:702 , HOH B:2841
BINDING SITE FOR RESIDUE CO B1730
11
BC2
SOFTWARE
ASN B:607 , TRP B:609 , ARG B:673
BINDING SITE FOR RESIDUE CO B1731
12
BC3
SOFTWARE
GLN B:153 , HIS B:154 , HIS B:438 , HOH B:2843
BINDING SITE FOR RESIDUE CO B1732
13
BC4
SOFTWARE
ASP A:450 , ARG A:451 , HOH A:2806 , ARG B:189 , THR B:449 , EDO B:1726
BINDING SITE FOR RESIDUE EDO A1714
14
BC5
SOFTWARE
HIS A:130 , ARG A:133 , SER A:148 , ARG A:468 , TRP A:471 , ILE A:475 , EDO A:1725 , EDO A:1726 , HOH A:2547 , HOH A:2819
BINDING SITE FOR RESIDUE EDO A1715
15
BC6
SOFTWARE
TYR A:8 , ASP A:9 , LEU A:12 , ASP A:192 , ARG A:195 , ILE A:196 , HOH A:2015 , HOH A:2024
BINDING SITE FOR RESIDUE EDO A1716
16
BC7
SOFTWARE
ASP A:178 , SER A:181 , TYR A:185 , EDO A:1723 , HOH A:2808 , HOH A:2815 , GLY B:455 , GLN B:644 , LEU B:648 , HOH B:2542
BINDING SITE FOR RESIDUE EDO A1717
17
BC8
SOFTWARE
ASP A:631 , LYS A:646 , GLN A:650 , HOH A:2809
BINDING SITE FOR RESIDUE EDO A1718
18
BC9
SOFTWARE
ARG A:51 , PRO A:188 , ASP A:192 , HOH A:2283 , HOH A:2810 , HOH A:2811
BINDING SITE FOR RESIDUE EDO A1719
19
CC1
SOFTWARE
ARG A:92 , LEU A:102 , SER A:145 , HOH A:2221
BINDING SITE FOR RESIDUE EDO A1720
20
CC2
SOFTWARE
ARG A:31 , HIS A:32 , PRO A:60 , ILE A:61 , VAL A:62 , ARG A:64 , HOH A:2099
BINDING SITE FOR RESIDUE EDO A1721
21
CC3
SOFTWARE
LEU A:260 , GLY A:301 , ARG A:302 , GLU A:306 , HOH A:2812
BINDING SITE FOR RESIDUE EDO A1722
22
CC4
SOFTWARE
LEU A:176 , ASP A:178 , ARG A:189 , TYR A:190 , EDO A:1717 , HOH A:2814 , HOH A:2815 , HOH A:2816
BINDING SITE FOR RESIDUE EDO A1723
23
CC5
SOFTWARE
ASN A:559 , HIS A:594 , HIS A:595 , HOH A:2817 , HOH A:2818
BINDING SITE FOR RESIDUE EDO A1724
24
CC6
SOFTWARE
TYR A:101 , ARG A:133 , SER A:199 , LEU A:200 , TRP A:471 , EDO A:1715 , HOH A:2296
BINDING SITE FOR RESIDUE EDO A1725
25
CC7
SOFTWARE
HIS A:130 , ARG A:133 , LEU A:134 , GLU A:483 , EDO A:1715 , HOH A:2819
BINDING SITE FOR RESIDUE EDO A1726
26
CC8
SOFTWARE
ASN A:383 , MET A:384 , ILE A:428 , THR A:436 , HIS A:438
BINDING SITE FOR RESIDUE EDO A1727
27
CC9
SOFTWARE
GLU B:483 , HOH B:2819 , HOH B:2820 , HOH B:2821
BINDING SITE FOR RESIDUE EDO B1714
28
DC1
SOFTWARE
GLN B:627 , ASP B:631 , LYS B:646 , GLN B:650 , HOH B:2822
BINDING SITE FOR RESIDUE EDO B1715
29
DC2
SOFTWARE
ARG B:51 , PRO B:188 , ASP B:192 , HOH B:2281 , HOH B:2823 , HOH B:2824
BINDING SITE FOR RESIDUE EDO B1716
30
DC3
SOFTWARE
ASN B:559 , THR B:561 , HIS B:594 , HIS B:595 , HOH B:2825 , HOH B:2826
BINDING SITE FOR RESIDUE EDO B1717
31
DC4
SOFTWARE
TYR B:8 , ASP B:9 , LEU B:12 , ASP B:192 , ARG B:195 , ILE B:196 , HOH B:2025 , HOH B:2827
BINDING SITE FOR RESIDUE EDO B1718
32
DC5
SOFTWARE
GLY A:349 , LYS A:350 , PHE A:351 , ALA A:352 , GLY B:420 , GLU B:421 , HOH B:2828
BINDING SITE FOR RESIDUE EDO B1719
33
DC6
SOFTWARE
HIS B:130 , ARG B:133 , SER B:148 , ARG B:468 , TRP B:471 , ILE B:475 , EDO B:1721 , HOH B:2820 , HOH B:2821
BINDING SITE FOR RESIDUE EDO B1720
34
DC7
SOFTWARE
TYR B:101 , ARG B:133 , SER B:199 , LEU B:200 , TRP B:471 , EDO B:1720 , HOH B:2291
BINDING SITE FOR RESIDUE EDO B1721
35
DC8
SOFTWARE
ASN B:361 , PHE B:372 , SER B:411 , THR B:414 , HOH B:2469 , HOH B:2829 , HOH B:2830 , HOH B:2831
BINDING SITE FOR RESIDUE EDO B1722
36
DC9
SOFTWARE
GLN B:265 , ASN B:309 , MET B:310 , HOH B:2384 , HOH B:2420
BINDING SITE FOR RESIDUE EDO B1723
37
EC1
SOFTWARE
ARG A:419 , ARG B:151 , GLU B:430 , HOH B:2236 , HOH B:2522 , HOH B:2524 , HOH B:2832
BINDING SITE FOR RESIDUE EDO B1724
38
EC2
SOFTWARE
VAL B:35 , ALA B:46 , ALA B:63 , ARG B:64 , HOH B:2833 , HOH B:2834 , HOH B:2835
BINDING SITE FOR RESIDUE EDO B1725
39
EC3
SOFTWARE
EDO A:1714 , ARG B:165 , LEU B:176 , ASP B:178 , ALA B:187 , ARG B:189 , TYR B:190 , HOH B:2836 , HOH B:2837
BINDING SITE FOR RESIDUE EDO B1726
40
EC4
SOFTWARE
SER B:148 , ALA B:149 , ARG B:151 , TRP B:471 , ASP B:472 , HOH B:2232 , HOH B:2838 , HOH B:2839
BINDING SITE FOR RESIDUE EDO B1727
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1h41a2 (A:5-151)
1b: SCOP_d1h41b2 (B:5-151)
2a: SCOP_d1h41a1 (A:152-712)
2b: SCOP_d1h41b1 (B:152-712)
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(
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(
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Superfamilies
(
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(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
1a
d1h41a2
A:5-151
1b
d1h41b2
B:5-151
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
2a
d1h41a1
A:152-712
2b
d1h41b1
B:152-712
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1h41A01 (A:18-148)
1b: CATH_1h41B01 (B:18-148)
2a: CATH_1h41B02 (B:153-472)
2b: CATH_1h41A02 (A:153-472)
3a: CATH_1h41A03 (A:476-712)
3b: CATH_1h41B03 (B:476-712)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Pseudomonas cellulosa. Organism_taxid: 155077.
(2)
1a
1h41A01
A:18-148
1b
1h41B01
B:18-148
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Pseudomonas cellulosa. Organism_taxid: 155077.
(4)
2a
1h41B02
B:153-472
2b
1h41A02
A:153-472
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Pseudomonas cellulosa. Organism_taxid: 155077.
(2)
3a
1h41A03
A:476-712
3b
1h41B03
B:476-712
[
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Pfam Domains
(0, 0)
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all PFAM domains
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