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1H3W
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY
Authors
:
S. Krapp, Y. Mimura, R. Jefferis, R. Huber, P. Sondermann
Date
:
19 Sep 02 (Deposition) - 23 Jan 03 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : M
Biol. Unit 1: M (2x)
Keywords
:
Immunoglobulin/Fc-Fragment, Fc-Fragment, Glycosylation, Fcgr, Antibody, Effector Functions, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Krapp, Y. Mimura, R. Jefferis, R. Huber, P. Sondermann
Structural Analysis Of Human Igg-Fc Glycoforms Reveals A Correlation Between Glycosylation And Structural Integrity
J. Mol. Biol. V. 325 979 2003
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE M:241 , PHE M:243 , VAL M:264 , ASP M:265 , GLN M:272 , TYR M:296 , ASN M:297 , ARG M:301
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 297 RESIDUES 1444 TO 1449
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003887 (E356E, chain M, )
2: VAR_003888 (M358M, chain M, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
M
E
356
E
2
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
M
M
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|M:423-429)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
1
-
M:423-429
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Exons
(2, 2)
Info
All Exons
Exon 1.3b (M:238-341)
Exon 1.4c (M:341-443)
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4c
3: Boundary 1.4c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
1.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
0
-
-
1.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
1
M:238-341
104
1.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
1
M:341-443
103
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1h3wm1 (M:238-341)
2a: SCOP_d1h3wm2 (M:342-443)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d1h3wm1
M:238-341
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
2a
d1h3wm2
M:342-443
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1h3wM02 (M:338-443)
1b: CATH_1h3wM01 (M:238-337)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1h3wM02
M:338-443
1b
1h3wM01
M:238-337
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain M
Asymmetric Unit 1
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