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1H31
Biol. Unit 4
Info
Asym.Unit (280 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
OXIDISED SOXAX COMPLEX FROM RHODOVULUM SULFIDOPHILUM
Authors
:
V. A. Bamford, S. Bruno, T. Rasmussen, C. Appia-Ayme, M. R. Cheesman, B. A. M. Hemmings
Date
:
21 Aug 02 (Deposition) - 07 Nov 02 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Electron Transport, Sulfur Cycle, Soxax Complex, Thiosulfate Oxidation, Cysteine Persulfide Heme Ligand
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Bamford, S. Bruno, T. Rasmussen, C. Appia-Ayme, M. R. Cheesman, B. C. Berks, A. M. Hemmings
Structural Basis For The Oxidation Of Thiosulfate By A Sulfur Cycle Enzyme
Embo J. V. 21 5599 2002
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
1d: S-MERCAPTOCYSTEINE (CSSd)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
2d: HEME C (HECd)
2e: HEME C (HECe)
2f: HEME C (HECf)
2g: HEME C (HECg)
2h: HEME C (HECh)
2i: HEME C (HECi)
2j: HEME C (HECj)
2k: HEME C (HECk)
2l: HEME C (HECl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
HEC
3
Ligand/Ion
HEME C
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:75 , CYS A:76 , CYS A:79 , HIS A:80 , LEU A:90 , TYR A:94 , SER A:100 , MET A:110 , ILE A:111 , CYS A:114 , ARG A:118 , MET A:119 , HOH A:2117 , HOH A:2118 , HOH A:2119 , HOH A:2120 , THR H:109 , LYS H:111
BINDING SITE FOR RESIDUE HEC A1262
2
BC1
SOFTWARE
ALA G:75 , CYS G:76 , CYS G:79 , HIS G:80 , LEU G:90 , TYR G:94 , SER G:100 , MET G:110 , ILE G:111 , CYS G:114 , ARG G:118 , MET G:119 , HOH G:2049 , HOH G:2055 , HOH G:2109 , HOH G:2110 , HOH G:2111
BINDING SITE FOR RESIDUE HEC G1262
3
BC2
SOFTWARE
GLY G:34 , ARG G:38 , LEU G:175 , SER G:176 , CYS G:177 , CYS G:180 , HIS G:181 , ASP G:192 , HIS G:193 , LEU G:194 , SER G:195 , ILE G:199 , PHE G:202 , ARG G:218 , PHE G:219 , CSS G:222 , ILE G:223 , ARG G:260 , HOH G:2108 , HOH G:2112 , HOH G:2113 , HOH G:2114
BINDING SITE FOR RESIDUE HEC G1263
4
BC3
SOFTWARE
TYR G:184 , CYS H:42 , CYS H:45 , HIS H:46 , GLY H:61 , PRO H:62 , LEU H:64 , ARG H:70 , TYR H:71 , LEU H:80 , PHE H:87 , THR H:90 , VAL H:91 , MET H:92 , PRO H:93 , TYR H:95 , VAL H:129 , LEU H:133 , HOH H:2065
BINDING SITE FOR RESIDUE HEC H1139
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (G:48-142)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
SOXA_RHOSU
74-168
1
-
-
-
G:48-142
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1h31a1 (A:1-150)
1b: SCOP_d1h31a2 (A:151-261)
1c: SCOP_d1h31c1 (C:1-150)
1d: SCOP_d1h31c2 (C:151-261)
1e: SCOP_d1h31e1 (E:1-150)
1f: SCOP_d1h31e2 (E:151-261)
1g: SCOP_d1h31g1 (G:1-150)
1h: SCOP_d1h31g2 (G:151-261)
2a: SCOP_d1h31b_ (B:)
2b: SCOP_d1h31d_ (D:)
2c: SCOP_d1h31f_ (F:)
2d: SCOP_d1h31h_ (H:)
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(
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(
)
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Di-heme cytochrome c SoxA
(4)
Protein domain
:
Di-heme cytochrome c SoxA
(4)
Rhodovulum sulfidophilum [TaxId: 35806]
(4)
1a
d1h31a1
A:1-150
1b
d1h31a2
A:151-261
1c
d1h31c1
C:1-150
1d
d1h31c2
C:151-261
1e
d1h31e1
E:1-150
1f
d1h31e2
E:151-261
1g
d1h31g1
G:1-150
1h
d1h31g2
G:151-261
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mono-heme c-type cytochrome SoxX
(4)
Rhodovulum sulfidophilum [TaxId: 35806]
(4)
2a
d1h31b_
B:
2b
d1h31d_
D:
2c
d1h31f_
F:
2d
d1h31h_
H:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1h31B00 (B:1-138)
1b: CATH_1h31E02 (E:55-142)
1c: CATH_1h31G02 (G:55-142)
1d: CATH_1h31A01 (A:1-54,A:146-260)
1e: CATH_1h31C01 (C:1-54,C:146-260)
1f: CATH_1h31E01 (E:1-54,E:146-260)
1g: CATH_1h31G01 (G:1-54,G:146-260)
1h: CATH_1h31D00 (D:1-138)
1i: CATH_1h31F00 (F:1-138)
1j: CATH_1h31H00 (H:1-138)
1k: CATH_1h31A02 (A:55-142)
1l: CATH_1h31C02 (C:55-142)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodovulum sulfidophilum. Organism_taxid: 35806.
(3)
1a
1h31B00
B:1-138
1b
1h31E02
E:55-142
1c
1h31G02
G:55-142
1d
1h31A01
A:1-54,A:146-260
1e
1h31C01
C:1-54,C:146-260
1f
1h31E01
E:1-54,E:146-260
1g
1h31G01
G:1-54,G:146-260
1h
1h31D00
D:1-138
1i
1h31F00
F:1-138
1j
1h31H00
H:1-138
1k
1h31A02
A:55-142
1l
1h31C02
C:55-142
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Pfam Domains
(0, 0)
Info
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Asymmetric Unit 1
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Asym.Unit (280 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (72 KB)
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Biol.Unit 4 (72 KB)
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