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1H2L
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT PEPTIDE
Authors
:
J. M. Elkins, K. S. Hewitson, L. A. Mcneill, I. Schlemminger, J. F. Seibe C. J. Schofield
Date
:
12 Aug 02 (Deposition) - 28 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,S
Biol. Unit 1: A,S (2x)
Keywords
:
Transcription Activator-Inhibitor Complex, Transcription Activator Inhibitor Complex, Oxygenase, Transcription, Hypoxia, Asparaginyl Hydroxylase, Hydroxylase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Elkins, K. S. Hewitson, L. A. Mcneill, J. F. Seibel, I. Schlemminger, C. Pugh, P. Ratcliffe, C. J. Schofield
Structure Of Factor-Inhibiting Hypoxia-Inducible Factor (Hif) Reveals Mechanism Of Oxidative Modification Of Hif-1Alpha
J. Biol. Chem. V. 278 1802 2003
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
2a: FE (II) ION (FE2a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKG
1
Ligand/Ion
2-OXOGLUTARIC ACID
2
FE2
1
Ligand/Ion
FE (II) ION
3
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:199 , ASP A:201 , HIS A:279 , AKG A:1351
BINDING SITE FOR RESIDUE FE2 A1350
2
AC2
SOFTWARE
ARG A:138 , GLY A:140 , GLU A:141 , GLU A:142
BINDING SITE FOR RESIDUE SO4 A1352
3
AC3
SOFTWARE
ARG A:143 , GLU A:192 , GLY A:193 , LEU A:285 , ASN A:286
BINDING SITE FOR RESIDUE SO4 A1353
4
AC4
SOFTWARE
TYR A:145 , THR A:196 , HIS A:199 , ASP A:201 , ASN A:205 , PHE A:207 , LYS A:214 , HIS A:279 , ILE A:281 , ASN A:294 , TRP A:296 , FE2 A:1350 , HOH A:2065
BINDING SITE FOR RESIDUE AKG A1351
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051028 (P41A, chain A, )
2: VAR_015854 (T796A, chain S, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051028
P
41
A
HIF1N_HUMAN
Polymorphism
2295778
A
P
41
A
2
UniProt
VAR_015854
T
796
A
HIF1A_HUMAN
Polymorphism
1802821
S
T
796
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:142-312)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
HIF1N_HUMAN
142-312
1
A:142-312
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Exons
(9, 9)
Info
All Exons
Exon 1.2b (A:15-59)
Exon 1.3b (A:60-143)
Exon 1.4b (A:143-193)
Exon 1.5a (A:193-241)
Exon 1.6b (A:242-277)
Exon 1.7 (A:277-298)
Exon 1.8b (A:299-335 (gaps))
Exon 1.9b (A:336-349)
Exon 2.15 (S:795-822 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2b
02: Boundary 1.2b/1.3b
03: Boundary 1.3b/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.6b
06: Boundary 1.6b/1.7
07: Boundary 1.7/1.8b
08: Boundary 1.8b/1.9b
09: Boundary 1.9b/-
10: Boundary 2.14/2.15
11: Boundary 2.15/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000299163
2b
ENSE00001695622
chr10:
102295616-102295892
277
HIF1N_HUMAN
1-59
59
1
A:15-59
45
1.3b
ENST00000299163
3b
ENSE00001100126
chr10:
102296168-102296418
251
HIF1N_HUMAN
60-143
84
1
A:60-143
84
1.4b
ENST00000299163
4b
ENSE00001100124
chr10:
102300391-102300539
149
HIF1N_HUMAN
143-193
51
1
A:143-193
51
1.5a
ENST00000299163
5a
ENSE00001100127
chr10:
102304708-102304853
146
HIF1N_HUMAN
193-241
49
1
A:193-241
49
1.6b
ENST00000299163
6b
ENSE00001100128
chr10:
102305700-102305806
107
HIF1N_HUMAN
242-277
36
1
A:242-277
36
1.7
ENST00000299163
7
ENSE00001100132
chr10:
102306275-102306338
64
HIF1N_HUMAN
277-298
22
1
A:277-298
22
1.8b
ENST00000299163
8b
ENSE00001100130
chr10:
102306897-102307007
111
HIF1N_HUMAN
299-335
37
1
A:299-335 (gaps)
37
1.9b
ENST00000299163
9b
ENSE00001212367
chr10:
102307850-102309763
1914
HIF1N_HUMAN
336-349
14
1
A:336-349
14
2.1a
ENST00000337138
1a
ENSE00001520256
chr14:
62162258-62162557
300
HIF1A_HUMAN
1-12
12
0
-
-
2.2b
ENST00000337138
2b
ENSE00000867524
chr14:
62187100-62187290
191
HIF1A_HUMAN
12-76
65
0
-
-
2.3
ENST00000337138
3
ENSE00000658281
chr14:
62188227-62188372
146
HIF1A_HUMAN
76-124
49
0
-
-
2.4
ENST00000337138
4
ENSE00000658282
chr14:
62188457-62188541
85
HIF1A_HUMAN
125-153
29
0
-
-
2.5
ENST00000337138
5
ENSE00000658283
chr14:
62193424-62193536
113
HIF1A_HUMAN
153-190
38
0
-
-
2.6
ENST00000337138
6
ENSE00000658284
chr14:
62194171-62194373
203
HIF1A_HUMAN
191-258
68
0
-
-
2.7
ENST00000337138
7
ENSE00000658285
chr14:
62199136-62199242
107
HIF1A_HUMAN
258-294
37
0
-
-
2.8
ENST00000337138
8
ENSE00000658286
chr14:
62200856-62201003
148
HIF1A_HUMAN
294-343
50
0
-
-
2.9
ENST00000337138
9
ENSE00000658287
chr14:
62203607-62203827
221
HIF1A_HUMAN
343-417
75
0
-
-
2.10
ENST00000337138
10
ENSE00000658289
chr14:
62204805-62205091
287
HIF1A_HUMAN
417-512
96
0
-
-
2.11
ENST00000337138
11
ENSE00000658291
chr14:
62207223-62207345
123
HIF1A_HUMAN
513-553
41
0
-
-
2.12
ENST00000337138
12
ENSE00000658293
chr14:
62207473-62207906
434
HIF1A_HUMAN
554-698
145
0
-
-
2.13
ENST00000337138
13
ENSE00000658295
chr14:
62211423-62211531
109
HIF1A_HUMAN
698-734
37
0
-
-
2.14
ENST00000337138
14
ENSE00000658297
chr14:
62212409-62212535
127
HIF1A_HUMAN
735-777
43
0
-
-
2.15
ENST00000337138
15
ENSE00001660793
chr14:
62213652-62214976
1325
HIF1A_HUMAN
777-826
50
1
S:795-822 (gaps)
28
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1h2la_ (A:)
2a: SCOP_d1h2ls_ (S:)
View:
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Classes
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Folds
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Protein domain
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d1h2la_
A:
Class
:
Peptides
(792)
Fold
:
Transactivation domain
(6)
Superfamily
:
Transactivation domain
(6)
Family
:
Transactivation domain
(6)
Protein domain
:
C-terminal activation domain (CTAD) of HIF-1alpha
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1h2ls_
S:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1h2lA02 (A:307-349)
View:
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Topologies
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Clavaminate synthase-like
(17)
Human (Homo sapiens)
(17)
1a
1h2lA02
A:307-349
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Nucleic
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Protein & NOT PROSITE
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Chain S
Asymmetric Unit 1
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