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1H1O
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
ACIDITHIOBACILLUS FERROOXIDANS CYTOCHROME C4 STRUCTURE SUPPORTS A COMPLEX-INDUCED TUNING OF ELECTRON TRANSFER
Authors
:
C. Abergel, W. Nitschke, G. Malarte, M. Bruschi, J. -M. Claverie, M. -T. Guidici-Orticoni
Date
:
19 Jul 02 (Deposition) - 17 Jul 03 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Electron Transport, C4, Cytochrome, Electron Transfer, Heme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Abergel, W. Nitschke, G. Malarte, M. Bruschi, J. -M. Claverie, M. -T. Guidici-Orticoni
The Structure Of Acidithiobacillus Ferrooxidans C(4)-Cytochrome. A Model For Complex-Induced Electron Transfer Tuning
Structure V. 11 547 2003
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
6
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:98 , GLY A:99 , GLU A:102 , ALA A:171 , ASP A:175 , HOH A:2112 , HOH A:2113
BINDING SITE FOR RESIDUE SO4 A1186
02
AC2
SOFTWARE
HIS A:39 , LYS A:40 , ASN A:84 , HOH A:2114 , HOH A:2115
BINDING SITE FOR RESIDUE ZN A1187
03
AC3
SOFTWARE
HIS A:152
BINDING SITE FOR RESIDUE ZN A1189
04
AC4
SOFTWARE
PRO A:117 , ALA A:118 , GLU A:121 , HIS B:239 , LYS B:240 , SER B:241 , ASN B:284 , GLY B:331 , ZN B:1388 , HOH B:2067
BINDING SITE FOR RESIDUE SO4 B1387
05
AC5
SOFTWARE
GLU A:121 , HIS B:239 , SO4 B:1387 , HOH B:2068
BINDING SITE FOR RESIDUE ZN B1388
06
AC6
SOFTWARE
HIS B:352 , HOH B:2069
BINDING SITE FOR RESIDUE ZN B1389
07
AC7
SOFTWARE
ARG B:234 , HIS B:297
BINDING SITE FOR RESIDUE ZN B1390
08
AC8
SOFTWARE
TYR A:42 , GLN A:46 , PRO A:117 , CYS A:119 , CYS A:122 , HIS A:123 , PRO A:134 , LEU A:136 , TYR A:143 , LEU A:148 , PHE A:151 , ARG A:156 , ASN A:158 , MET A:161 , ILE A:164 , ILE A:168 , VAL A:176 , HEM A:1185 , HOH A:2080 , HOH A:2093 , HOH A:2110 , HOH A:2111
BINDING SITE FOR RESIDUE HEM A1184
09
AC9
SOFTWARE
ASP A:15 , CYS A:16 , CYS A:19 , HIS A:20 , ILE A:31 , PRO A:33 , TYR A:42 , LEU A:47 , TYR A:50 , ARG A:55 , ASP A:57 , ASN A:59 , GLY A:60 , TYR A:63 , MET A:64 , VAL A:67 , LEU A:79 , TYR A:143 , GLN A:147 , TYR A:150 , HEM A:1184 , HOH A:2020 , HOH A:2042 , ILE B:262 , TYR B:263
BINDING SITE FOR RESIDUE HEM A1185
10
BC1
SOFTWARE
TYR B:242 , GLN B:246 , ILE B:316 , CYS B:319 , CYS B:322 , HIS B:323 , PRO B:332 , PHE B:333 , PRO B:334 , LEU B:336 , TYR B:343 , GLN B:347 , LEU B:348 , ARG B:356 , ASN B:358 , LEU B:360 , MET B:361 , ILE B:364 , VAL B:376 , HEM B:1386 , HOH B:2045 , HOH B:2064 , HOH B:2065
BINDING SITE FOR RESIDUE HEM B1385
11
BC2
SOFTWARE
TYR A:29 , ASP B:215 , CYS B:216 , VAL B:218 , CYS B:219 , HIS B:220 , ILE B:231 , PRO B:233 , LEU B:235 , TYR B:242 , LEU B:247 , TYR B:250 , ARG B:255 , ASP B:257 , ASN B:259 , GLY B:260 , TYR B:263 , MET B:264 , LEU B:279 , TYR B:343 , GLN B:347 , HEM B:1385 , HOH B:2013 , HOH B:2066
BINDING SITE FOR RESIDUE HEM B1386
12
BC3
SOFTWARE
CYS A:122 , GLY B:324 , SER B:325 , GLN B:328 , HOH B:2063
BINDING SITE FOR RESIDUE GOL B1384
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTC (-|A:98-183,B:298-383)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CY552_ACIFR
44-134
145-230
2
-
A:98-183
B:298-383
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1h1oa1 (A:12-93)
1b: SCOP_d1h1oa2 (A:94-183)
1c: SCOP_d1h1ob1 (B:213-293)
1d: SCOP_d1h1ob2 (B:294-383)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Two-domain cytochrome c
(6)
Protein domain
:
Cytochrome c4
(4)
Thiobacillus ferrooxidans [TaxId: 920]
(1)
1a
d1h1oa1
A:12-93
1b
d1h1oa2
A:94-183
1c
d1h1ob1
B:213-293
1d
d1h1ob2
B:294-383
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1h1oA02 (A:100-183)
1b: CATH_1h1oB02 (B:300-383)
1c: CATH_1h1oA01 (A:12-86)
1d: CATH_1h1oB01 (B:213-286)
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Organisms
(
)
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)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Thiobacillus ferrooxidans. Organism_taxid: 920.
(1)
1a
1h1oA02
A:100-183
1b
1h1oB02
B:300-383
1c
1h1oA01
A:12-86
1d
1h1oB01
B:213-286
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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wireframe 100
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Asym.Unit (69 KB)
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