PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1H0Z
Asym. Unit
Info
Asym.Unit (356 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(21 )
Title
:
LEKTI DOMAIN SIX
Authors
:
T. Lauber, P. Roesch, U. C. Marx
Date
:
01 Jul 02 (Deposition) - 26 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (21 x)
Keywords
:
Serine Proteinase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Lauber, A. Schulz, K. Schweimer, K. Adermann, U. C. Marx
Homologous Proteins With Different Folds: The Three-Dimensional Structures Of Domains 1 And 6 Of The Multiple Kazal-Type Inhibitor Lekti
J. Mol. Biol. V. 328 205 2003
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_047116 (N13N, chain A, )
2: VAR_047117 (D31N, chain A, )
3: VAR_047118 (V40M, chain A, )
4: VAR_015537 (E65E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047116
S
368
N
ISK5_HUMAN
Polymorphism
2303063
A
N
13
N
2
UniProt
VAR_047117
D
386
N
ISK5_HUMAN
Polymorphism
2303064
A
D
31
N
3
UniProt
VAR_047118
V
395
M
ISK5_HUMAN
Polymorphism
17775319
A
V
40
M
4
UniProt
VAR_015537
K
420
E
ISK5_HUMAN
Polymorphism
2303067
A
E
65
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: KAZAL_2 (-|-|-|A:6-68|-|-|-|-|-|-|-|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KAZAL_2
PS51465
Kazal domain profile.
ISK5_HUMAN
91-153
155-216
219-285
361-423
291-335
490-551
431-489
626-688
561-622
768-830
701-757
987-1048
910-954
843-905
1
-
-
-
A:6-68
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.17 (A:1-9)
Exon 1.19 (A:10-52)
Exon 1.20b (A:52-68)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.16a/1.17
2: Boundary 1.17/1.19
3: Boundary 1.19/1.20b
4: Boundary 1.20b/1.21
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2e
ENST00000256084
2e
ENSE00001825792
chr5:
147443566-147443662
97
ISK5_HUMAN
1-19
19
0
-
-
1.3a
ENST00000256084
3a
ENSE00001418891
chr5:
147444910-147444935
26
ISK5_HUMAN
19-27
9
0
-
-
1.4a
ENST00000256084
4a
ENSE00001125979
chr5:
147449886-147450013
128
ISK5_HUMAN
28-70
43
0
-
-
1.5b
ENST00000256084
5b
ENSE00001125971
chr5:
147451711-147451783
73
ISK5_HUMAN
70-94
25
0
-
-
1.6
ENST00000256084
6
ENSE00001125964
chr5:
147465968-147466095
128
ISK5_HUMAN
95-137
43
0
-
-
1.7
ENST00000256084
7
ENSE00001425743
chr5:
147468105-147468168
64
ISK5_HUMAN
137-158
22
0
-
-
1.10
ENST00000256084
10
ENSE00001125950
chr5:
147469057-147469184
128
ISK5_HUMAN
159-201
43
0
-
-
1.13
ENST00000256084
13
ENSE00001125944
chr5:
147470728-147470791
64
ISK5_HUMAN
201-222
22
0
-
-
1.14
ENST00000256084
14
ENSE00001125937
chr5:
147473917-147474044
128
ISK5_HUMAN
223-265
43
0
-
-
1.15b
ENST00000256084
15b
ENSE00001125927
chr5:
147475381-147475468
88
ISK5_HUMAN
265-294
30
0
-
-
1.16a
ENST00000256084
16a
ENSE00001125920
chr5:
147477430-147477557
128
ISK5_HUMAN
295-337
43
0
-
-
1.17
ENST00000256084
17
ENSE00000910394
chr5:
147478797-147478878
82
ISK5_HUMAN
337-364
28
1
A:1-9
9
1.19
ENST00000256084
19
ENSE00001708768
chr5:
147480017-147480144
128
ISK5_HUMAN
365-407
43
1
A:10-52
43
1.20b
ENST00000256084
20b
ENSE00000910392
chr5:
147480918-147480999
82
ISK5_HUMAN
407-434
28
1
A:52-68
17
1.21
ENST00000256084
21
ENSE00000910391
chr5:
147481344-147481471
128
ISK5_HUMAN
435-477
43
0
-
-
1.22
ENST00000256084
22
ENSE00001125893
chr5:
147484515-147484563
49
ISK5_HUMAN
477-493
17
0
-
-
1.23
ENST00000256084
23
ENSE00000910389
chr5:
147486600-147486727
128
ISK5_HUMAN
494-536
43
0
-
-
1.24
ENST00000256084
24
ENSE00000910388
chr5:
147488316-147488400
85
ISK5_HUMAN
536-564
29
0
-
-
1.25
ENST00000256084
25
ENSE00001776979
chr5:
147491331-147491458
128
ISK5_HUMAN
565-607
43
0
-
-
1.26
ENST00000256084
26
ENSE00000910386
chr5:
147492431-147492497
67
ISK5_HUMAN
607-629
23
0
-
-
1.27
ENST00000256084
27
ENSE00000910385
chr5:
147493925-147494052
128
ISK5_HUMAN
630-672
43
0
-
-
1.28
ENST00000256084
28
ENSE00000910384
chr5:
147495933-147496029
97
ISK5_HUMAN
672-704
33
0
-
-
1.29
ENST00000256084
29
ENSE00000910383
chr5:
147498000-147498127
128
ISK5_HUMAN
705-747
43
0
-
-
1.30b
ENST00000256084
30b
ENSE00000910382
chr5:
147498549-147498621
73
ISK5_HUMAN
747-771
25
0
-
-
1.31
ENST00000256084
31
ENSE00000910381
chr5:
147499572-147499699
128
ISK5_HUMAN
772-814
43
0
-
-
1.32
ENST00000256084
32
ENSE00000910380
chr5:
147499858-147499954
97
ISK5_HUMAN
814-846
33
0
-
-
1.33
ENST00000256084
33
ENSE00002170188
chr5:
147503396-147503523
128
ISK5_HUMAN
847-889
43
0
-
-
1.34a
ENST00000256084
34a
ENSE00001032827
chr5:
147504328-147504400
73
ISK5_HUMAN
889-913
25
0
-
-
1.36
ENST00000256084
36
ENSE00000910377
chr5:
147505286-147505413
128
ISK5_HUMAN
914-956
43
0
-
-
1.37
ENST00000256084
37
ENSE00000910376
chr5:
147506546-147506642
97
ISK5_HUMAN
956-988
33
0
-
-
1.38
ENST00000256084
38
ENSE00000910375
chr5:
147510822-147510952
131
ISK5_HUMAN
989-1032
44
0
-
-
1.39
ENST00000256084
39
ENSE00001154656
chr5:
147513360-147513450
91
ISK5_HUMAN
1032-1062
31
0
-
-
1.41a
ENST00000256084
41a
ENSE00001201900
chr5:
147516546-147516852
307
ISK5_HUMAN
1063-1064
2
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1h0za_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kazal-type serine protease inhibitors
(75)
Superfamily
:
Kazal-type serine protease inhibitors
(75)
Family
:
Serine proteinase inhibitor lekti
(3)
Protein domain
:
Serine proteinase inhibitor lekti
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1h0za_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1h0zA00 (A:1-68)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Kazal-type serine protease inhibitors
(3)
Homologous Superfamily
:
Kazal-type serine protease inhibitors
(3)
Human (Homo sapiens)
(3)
1a
1h0zA00
A:1-68
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (356 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1H0Z
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help