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1H0G
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1 (174 KB)
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(1)
Title
:
COMPLEX OF A CHITINASE WITH THE NATURAL PRODUCT CYCLOPENTAPEPTIDE ARGADIN FROM CLONOSTACHYS
Authors
:
D. R. Houston, K. Shiomi, N. Arai, S. Omura, M. G. Peter, A. Turberg, B. Sy V. G. H. Eijsink, D. M. F. Van Aalten
Date
:
19 Jun 02 (Deposition) - 27 Jun 02 (Release) - 16 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase, Chitin Degradation, Argadin, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Houston, K. Shiomi, N. Arai, S. Omura, M. G. Peter, A. Turberg, B. Synstad, V. G. H. Eijsink, D. M. F. Van Aalten
High Resolution Inhibited Complexes Of A Chitinase With Natural Product Cyclopentapeptides - Peptide Mimicry Of A Carbohydrate Substrate
Proc. Natl. Acad. Sci. Usa V. 99 9127 2002
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: N-[N-[(4S)-4-AZANYL-5-HYDROXY-5-OX... (0ARa)
1b: N-[N-[(4S)-4-AZANYL-5-HYDROXY-5-OX... (0ARb)
2a: D-PROLINE (DPRa)
2b: D-PROLINE (DPRb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: L-HOMOSERINE (HSEa)
4b: L-HOMOSERINE (HSEb)
5a: 2-AMINOHEXANEDIOIC ACID (UN1a)
5b: 2-AMINOHEXANEDIOIC ACID (UN1b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0AR
2
Mod. Amino Acid
N-[N-[(4S)-4-AZANYL-5-HYDROXY-5-OXO-PENTYL]CARBAMIMIDOYL]ETHANAMIDE
2
DPR
2
Mod. Amino Acid
D-PROLINE
3
GOL
5
Ligand/Ion
GLYCEROL
4
HSE
2
Mod. Amino Acid
L-HOMOSERINE
5
UN1
2
Mod. Amino Acid
2-AMINOHEXANEDIOIC ACID
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:479 , GLY A:480 , HOH A:2305 , HOH A:2306 , GLU B:221 , PHE B:239 , GOL B:1504
BINDING SITE FOR RESIDUE GOL A 1500
2
AC2
SOFTWARE
PHE B:12 , PHE B:51 , TRP B:97 , TYR B:98 , HOH B:2059 , GOL C:1502
BINDING SITE FOR RESIDUE GOL B 1501
3
AC3
SOFTWARE
PRO B:260 , PHE B:263 , SER B:264 , ARG B:439 , THR B:441 , HOH B:2160
BINDING SITE FOR RESIDUE GOL B 1503
4
AC4
SOFTWARE
GOL B:1501 , HOH C:2300
BINDING SITE FOR RESIDUE GOL C 1502
5
AC5
SOFTWARE
TRP A:479 , TYR A:481 , ILE A:482 , ASP A:489 , GOL A:1500 , PHE B:190 , PHE B:191 , ARG B:194 , HOH B:2301
BINDING SITE FOR RESIDUE GOL B 1504
6
AC6
SOFTWARE
TYR A:481 , TYR B:10 , TRP B:97 , ASP B:142 , GLU B:144 , PHE B:191 , MET B:212 , TYR B:214 , ASP B:215 , TRP B:220 , TYR B:292 , ARG B:294 , ASP B:316 , ILE B:339 , TRP B:403 , GOL B:1501 , GOL C:1502 , HOH C:2001
BINDING SITE FOR CHAIN C OF ARGADIN
7
AC7
SOFTWARE
TYR A:10 , TRP A:97 , ASP A:142 , GLU A:144 , PHE A:191 , TYR A:214 , ASP A:215 , TRP A:220 , TYR A:292 , ARG A:294 , ASP A:316 , TRP A:403 , TYR B:481 , HOH D:2005 , HOH D:2006
BINDING SITE FOR CHAIN D OF ARGADIN
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CHITINASE_18 (A:136-144,B:136-144)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHITINASE_18
PS01095
Chitinases family 18 active site.
CHIB_SERMA
136-144
2
A:136-144
B:136-144
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1h0ga1 (A:447-498)
1b: SCOP_d1h0gb1 (B:447-499)
2a: SCOP_d1h0ga3 (A:292-379)
2b: SCOP_d1h0gb3 (B:292-379)
3a: SCOP_d1h0ga2 (A:3-291,A:380-446)
3b: SCOP_d1h0gb2 (B:3-291,B:380-446)
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)
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)
(
)
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
WW domain-like
(101)
Superfamily
:
Carbohydrate binding domain
(20)
Family
:
Carbohydrate binding domain
(20)
Protein domain
:
Chitinase B, C-terminal domain
(18)
Serratia marcescens [TaxId: 615]
(18)
1a
d1h0ga1
A:447-498
1b
d1h0gb1
B:447-499
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitinase B
(18)
Serratia marcescens [TaxId: 615]
(18)
2a
d1h0ga3
A:292-379
2b
d1h0gb3
B:292-379
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitinase B, catalytic domain
(18)
Serratia marcescens [TaxId: 615]
(18)
3a
d1h0ga2
A:3-291,A:380-446
3b
d1h0gb2
B:3-291,B:380-446
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1h0gA01 (A:3-290,A:381-448)
1b: CATH_1h0gB01 (B:3-290,B:381-448)
2a: CATH_1h0gA02 (A:291-380)
2b: CATH_1h0gB02 (B:291-380)
3a: CATH_1h0gB03 (B:449-499)
3b: CATH_1h0gA03 (A:449-498)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Serratia marcescens. Organism_taxid: 615.
(19)
1a
1h0gA01
A:3-290,A:381-448
1b
1h0gB01
B:3-290,B:381-448
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Serratia marcescens. Organism_taxid: 615.
(17)
2a
1h0gA02
A:291-380
2b
1h0gB02
B:291-380
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Seminal Fluid Protein PDC-109 (Domain B)
(33)
Homologous Superfamily
:
[code=2.10.10.20, no name defined]
(20)
Serratia marcescens. Organism_taxid: 615.
(13)
3a
1h0gB03
B:449-499
3b
1h0gA03
A:449-498
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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