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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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1H0D
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (97 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN IN COMPLEX WITH FAB FRAGMENT OF ITS MONOCLONAL ANTIBODY MAB 26-2F
Authors
:
G. B. Chavali, A. C. Papageorgiou, K. R. Acharya
Date
:
19 Jun 02 (Deposition) - 19 Jun 03 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Immune System/Hydrolase, Complex (Antibody/Hydrolase), Ribonuclease, Antibody
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. B. Chavali, A. C. Papageorgiou, K. Olson, J. Fett, G. Hu, R. Shapiro, K. R. Acharya
The Crystal Structure Of Human Angiogenin In Complex With An Antitumor Neutralizing Antibody
Structure V. 11 875 2003
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: PYROGLUTAMIC ACID (PCAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:14 , LYS A:106 , HOH A:2130 , SER C:4 , ARG C:5
BINDING SITE FOR RESIDUE SO4 A1212
02
AC2
SOFTWARE
GLY B:53 , GLY B:54 , ARG B:71 , ILE B:73 , HOH B:2034 , HOH B:2104 , ARG C:21
BINDING SITE FOR RESIDUE SO4 B1216
03
AC3
SOFTWARE
HOH A:2101 , HIS C:13 , LYS C:40 , HOH C:2092 , HOH C:2093
BINDING SITE FOR RESIDUE SO4 C1124
04
AC4
SOFTWARE
ASN C:49 , LYS C:50 , ARG C:51 , HOH C:2011
BINDING SITE FOR RESIDUE SO4 C1125
05
AC5
SOFTWARE
HIS C:65 , ARG C:66
BINDING SITE FOR RESIDUE SO4 C1126
06
AC6
SOFTWARE
TYR C:6 , LYS C:50 , LYS C:54
BINDING SITE FOR RESIDUE SO4 C1127
07
AC7
SOFTWARE
ARG C:32 , ARG C:33
BINDING SITE FOR RESIDUE SO4 C1128
08
AC8
SOFTWARE
LYS C:60 , ASN C:63 , HIS C:65
BINDING SITE FOR RESIDUE SO4 C1129
09
AC9
SOFTWARE
SER A:55 , ARG A:208
BINDING SITE FOR RESIDUE GOL A1213
10
BC1
SOFTWARE
SER A:64 , GLY A:65 , SER A:66 , HOH A:2055
BINDING SITE FOR RESIDUE GOL A1214
11
BC2
SOFTWARE
PRO A:8 , ALA A:9 , SER A:10
BINDING SITE FOR RESIDUE GOL A1215
12
BC3
SOFTWARE
THR A:163 , ASP A:164 , ASP A:166 , HOH A:2110 , HOH A:2112 , HIS B:164
BINDING SITE FOR RESIDUE GOL A1216
13
BC4
SOFTWARE
GLU A:122 , SER B:120 , VAL B:121 , TYR B:122 , SER B:202 , SER B:203 , LYS B:208 , HOH B:2098
BINDING SITE FOR RESIDUE GOL B1217
14
BC5
SOFTWARE
GLN A:123 , SER A:126 , TYR B:122 , LYS B:143
BINDING SITE FOR RESIDUE GOL B1218
[
close Site info
]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_044147 (Q12L, chain C, )
02: VAR_073021 (Y14H, chain C, )
03: VAR_044148 (K17E, chain C, )
04: VAR_044149 (K17I, chain C, )
05: VAR_073022 (D22G, chain C, )
06: VAR_044150 (S28N, chain C, )
07: VAR_044151 (R31K, chain C, )
08: VAR_044152 (C39W, chain C, )
09: VAR_044153 (K40I, chain C, )
10: VAR_044154 (I46V, chain C, )
11: VAR_013148 (K60E, chain C, )
12: VAR_044155 (P112L, chain C, )
13: VAR_044156 (V113I, chain C, )
14: VAR_044157 (H114R, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_044147
Q
36
L
ANGI_HUMAN
Disease (ALS9)
---
C
Q
12
L
02
UniProt
VAR_073021
Y
38
H
ANGI_HUMAN
Disease (ALS9)
---
C
Y
14
H
03
UniProt
VAR_044148
K
41
E
ANGI_HUMAN
Disease (ALS9)
---
C
K
17
E
04
UniProt
VAR_044149
K
41
I
ANGI_HUMAN
Disease (ALS9)
---
C
K
17
I
05
UniProt
VAR_073022
D
46
G
ANGI_HUMAN
Disease (ALS9)
---
C
D
22
G
06
UniProt
VAR_044150
S
52
N
ANGI_HUMAN
Disease (ALS9)
---
C
S
28
N
07
UniProt
VAR_044151
R
55
K
ANGI_HUMAN
Disease (ALS9)
---
C
R
31
K
08
UniProt
VAR_044152
C
63
W
ANGI_HUMAN
Disease (ALS9)
---
C
C
39
W
09
UniProt
VAR_044153
K
64
I
ANGI_HUMAN
Disease (ALS9)
---
C
K
40
I
10
UniProt
VAR_044154
I
70
V
ANGI_HUMAN
Unclassified
---
C
I
46
V
11
UniProt
VAR_013148
K
84
E
ANGI_HUMAN
Polymorphism
17560
C
K
60
E
12
UniProt
VAR_044155
P
136
L
ANGI_HUMAN
Disease (ALS9)
---
C
P
112
L
13
UniProt
VAR_044156
V
137
I
ANGI_HUMAN
Disease (ALS9)
---
C
V
113
I
14
UniProt
VAR_044157
H
138
R
ANGI_HUMAN
Disease (ALS9)
---
C
H
114
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (C:39-45)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
ANGI_HUMAN
63-69
1
C:39-45
[
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]
Exons
(1, 1)
Info
All Exons
Exon 1.3c (C:1-123)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.3c
2: Boundary 1.3c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000397990
2a
ENSE00002201651
chr14:
21156932-21157033
102
ANGI_HUMAN
-
0
0
-
-
1.3c
ENST00000397990
3c
ENSE00001758396
chr14:
21161706-21162338
633
ANGI_HUMAN
1-153
153
1
C:1-123
123
[
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]
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1h0db2 (B:114-215)
2a: SCOP_d1h0da2 (A:107-211)
3a: SCOP_d1h0db1 (B:1-113)
4a: SCOP_d1h0da1 (A:1-106)
5a: SCOP_d1h0dc_ (C:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1h0db2
B:114-215
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1h0da2
A:107-211
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
(58)
3a
d1h0db1
B:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 2 [TaxId: 10090]
(28)
4a
d1h0da1
A:1-106
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Angiogenin
(32)
Human (Homo sapiens) [TaxId: 9606]
(30)
5a
d1h0dc_
C:
[
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]
CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1h0dC00 (C:2-123)
2a: CATH_1h0dA02 (A:108-203)
2b: CATH_1h0dA01 (A:1-107)
2c: CATH_1h0dB02 (B:114-212)
2d: CATH_1h0dB01 (B:1-113)
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)
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(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Human (Homo sapiens)
(46)
1a
1h0dC00
C:2-123
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1h0dA02
A:108-203
2b
1h0dA01
A:1-107
2c
1h0dB02
B:114-212
2d
1h0dB01
B:1-113
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
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)
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Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
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