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1GZL
Biol. Unit 1
Info
Asym.Unit (29 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET
Authors
:
S. K. Sia, P. A. Carr, A. G. Cochran, V. M. Malashkevich, P. S. Kim
Date
:
23 May 02 (Deposition) - 10 Oct 02 (Release) - 02 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (3x)
Biol. Unit 2: B,D (3x)
Keywords
:
Glycoprotein, Hiv Entry, Inhibitor, Cross-Link, Gp41, Coiled Coil
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Sia, P. A. Carr, A. G. Cochran, V. M. Malashkevich, P. S. Kim
Short Constrained Peptides That Inhibit Hiv-1 Entry
Proc. Natl. Acad. Sci. Usa V. 99 14664 2002
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: PENTANE-1,5-DIAMINE (N2Pa)
3b: PENTANE-1,5-DIAMINE (N2Pb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
N2P
3
Ligand/Ion
PENTANE-1,5-DIAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:16
BINDING SITE FOR RESIDUE CL A1046
2
AC3
SOFTWARE
GLU C:629 , ASP C:632 , ARG C:633 , GLU C:636
BINDING SITE FOR RESIDUE N2P C1640
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_GCN4_YEAST_004 (D7A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GCN4_YEAST_004
*
D
91
A
GCN4_YEAST
---
---
A
D
7
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: BZIP (A:38-40)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BZIP
PS50217
Basic-leucine zipper (bZIP) domain profile.
GCN4_YEAST
231-276
3
A:38-40
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gzl_1 (A:,C:)
1b: SCOP_d1gzl_2 (B:,D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Virus ectodomain
(48)
Family
:
Virus ectodomain
(44)
Protein domain
:
Retrovius gp41 protease-resistant core
(35)
Human immunodeficiency virus type 1 [TaxId: 11676]
(23)
1a
d1gzl.1
A:,C:
1b
d1gzl.2
B:,D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gzlA00 (A:1-45)
1b: CATH_1gzlB00 (B:1-45)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
[unclassified]
(20)
1a
1gzlA00
A:1-45
1b
1gzlB00
B:1-45
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (29 KB)
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