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1GZG
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (486 KB)
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(1)
Title
:
COMPLEX OF A MG2-DEPENDENT PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA (MUTANT D139N) WITH 5-FLUOROLEVULINIC ACID
Authors
:
F. Frere, W. -D. Schubert, F. Stauffer, N. Frankenberg, R. Neier, D. Jahn, D. W. Heinz
Date
:
21 May 02 (Deposition) - 27 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Lyase, Heme Biosynthesis, 5-Fluorolevulinic Acid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
F. Frere, W. -D. Schubert, F. Stauffer, N. Frankenberg, R. Neier, D. Jahn, D. W. Heinz
Structure Of Porphobilinogen Synthase From Pseudomonas Aeruginosa In Complex With 5-Fluorolevulinic Acid Suggests A Double Schiff Base Mechanism
J. Mol. Biol. V. 320 237 2002
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: 5-FLUOROLEVULINIC ACID (LAFa)
2b: 5-FLUOROLEVULINIC ACID (LAFb)
2c: 5-FLUOROLEVULINIC ACID (LAFc)
2d: 5-FLUOROLEVULINIC ACID (LAFd)
2e: 5-FLUOROLEVULINIC ACID (LAFe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
2
LAF
5
Ligand/Ion
5-FLUOROLEVULINIC ACID
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NA
2
Ligand/Ion
SODIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:181 , GLU A:245 , HOH A:2242 , HOH A:2243 , HOH A:2296 , HOH A:2297 , HOH A:2298
BINDING SITE FOR RESIDUE MG A1338
02
AC2
SOFTWARE
ASP A:127 , ALA A:129 , ASP A:131 , SER A:175 , LAF A:1336 , LAF A:1337 , HOH A:2196
BINDING SITE FOR RESIDUE NA A1339
03
AC3
SOFTWARE
PHE A:119 , PRO A:120 , GLU A:121 , LEU A:122 , HOH A:2354
BINDING SITE FOR RESIDUE SO4 A1340
04
AC4
SOFTWARE
ARG A:26 , LEU A:27 , HOH A:2047 , HOH A:2049 , ASP B:36 , ASP B:37 , ASP B:319
BINDING SITE FOR RESIDUE K B1339
05
AC5
SOFTWARE
ASP A:36 , ASP A:37 , ASP A:319 , ARG B:26 , LEU B:27 , HOH B:2066 , HOH B:2067
BINDING SITE FOR RESIDUE K B1340
06
AC6
SOFTWARE
GLU B:245 , ASP B:249 , HOH B:2219 , HOH B:2258 , HOH B:2259 , HOH B:2260 , HOH B:2261
BINDING SITE FOR RESIDUE MG B1341
07
AC7
SOFTWARE
ASP B:127 , SER B:175 , LAF B:1336 , LAF B:1337 , LAF B:1338 , HOH B:2194 , HOH B:2195
BINDING SITE FOR RESIDUE NA B1342
08
AC8
SOFTWARE
VAL B:76 , PHE B:119 , PRO B:120 , GLU B:121 , LEU B:122
BINDING SITE FOR RESIDUE SO4 B1343
09
AC9
SOFTWARE
ALA A:129 , ASP A:131 , ASN A:139 , SER A:175 , LYS A:205 , TYR A:211 , ARG A:215 , LYS A:229 , GLN A:233 , LYS A:260 , LAF A:1337 , NA A:1339 , HOH A:2195
BINDING SITE FOR RESIDUE LAF A1336
10
BC1
SOFTWARE
PHE A:86 , SER A:175 , LYS A:205 , TYR A:211 , PHE A:214 , LYS A:260 , TYR A:283 , VAL A:285 , SER A:286 , TYR A:324 , LAF A:1336 , NA A:1339
BINDING SITE FOR RESIDUE LAF A1337
11
BC2
SOFTWARE
SER B:175 , LYS B:205 , LYS B:229 , GLN B:233 , LYS B:260 , LAF B:1337 , LAF B:1338 , NA B:1342 , HOH B:2199 , HOH B:2316 , HOH B:2317
BINDING SITE FOR RESIDUE LAF B1336
12
BC3
SOFTWARE
SER B:175 , LYS B:205 , TYR B:211 , PHE B:214 , LYS B:260 , TYR B:283 , VAL B:285 , SER B:286 , TYR B:324 , LAF B:1336 , LAF B:1338 , NA B:1342
BINDING SITE FOR RESIDUE LAF B1337
13
BC4
SOFTWARE
ASP B:127 , ALA B:129 , ASP B:131 , SER B:175 , LYS B:205 , ARG B:215 , LYS B:229 , GLN B:233 , LYS B:260 , LAF B:1336 , LAF B:1337 , NA B:1342 , HOH B:2194 , HOH B:2195 , HOH B:2199 , HOH B:2315 , HOH B:2316 , HOH B:2317
BINDING SITE FOR RESIDUE LAF B1338
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: D_ALA_DEHYDRATASE (A:253-265,B:253-265)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_ALA_DEHYDRATASE
PS00169
Delta-aminolevulinic acid dehydratase active site.
HEM2_PSEAE
253-265
2
A:253-265
B:253-265
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gzga_ (A:)
1b: SCOP_d1gzgb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(36)
Protein domain
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(21)
Pseudomonas aeruginosa [TaxId: 287]
(2)
1a
d1gzga_
A:
1b
d1gzgb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gzgB00 (B:5-335)
1b: CATH_1gzgA00 (A:7-335)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Pseudomonas aeruginosa. Organism_taxid: 287.
(10)
1a
1gzgB00
B:5-335
1b
1gzgA00
A:7-335
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (131 KB)
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