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1GZ7
Asym. Unit
Info
Asym.Unit (363 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (94 KB)
Biol.Unit 3 (93 KB)
Biol.Unit 4 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CLOSED STATE OF LIPASE 2 FROM CANDIDA RUGOSA
Authors
:
J. M. Mancheno, J. A. Hermoso
Date
:
17 May 02 (Deposition) - 12 Jun 03 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Carboxylic Esterase, Glycoprotein.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Mancheno, M. A. Pernas, M. J. Martinez, B. Ochoa, M. L. Rua, J. A. Hermoso
Structural Insights Into The Lipase/Esterase Behavior In The Candida Rugosa Lipases Family: Crystal Structure Of The Lipase 2 Isoenzyme At 1. 97A Resolution
J. Mol. Biol. V. 332 1059 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:226 , PRO A:232 , PHE A:234 , ALA A:329 , HIS A:330 , VAL A:331 , HOH A:2461 , HOH A:2462
BINDING SITE FOR RESIDUE GOL A1537
02
AC2
SOFTWARE
PRO A:41 , HIS A:180 , ARG A:183 , LEU A:184 , GLN A:187
BINDING SITE FOR RESIDUE GOL A1538
03
AC3
SOFTWARE
ASN B:226 , PRO B:232 , PHE B:234 , ALA B:329 , HIS B:330 , VAL B:331
BINDING SITE FOR RESIDUE GOL B1537
04
AC4
SOFTWARE
HIS B:180 , ARG B:183 , GLN B:187 , TRP B:221
BINDING SITE FOR RESIDUE GOL B1538
05
AC5
SOFTWARE
ASN C:226 , PRO C:232 , PHE C:234 , HIS C:330 , VAL C:331 , HOH C:2311 , HOH C:2312
BINDING SITE FOR RESIDUE GOL C1537
06
AC6
SOFTWARE
HIS C:180 , ARG C:183 , GLN C:187 , TRP C:221 , HOH C:2118
BINDING SITE FOR RESIDUE GOL C1538
07
AC7
SOFTWARE
ASN D:226 , PRO D:232 , PHE D:234 , HIS D:330 , VAL D:331 , HOH D:2151 , HOH D:2345
BINDING SITE FOR RESIDUE GOL D1537
08
AC8
SOFTWARE
HIS D:180 , ARG D:183 , GLN D:187 , TRP D:221 , PHE D:314
BINDING SITE FOR RESIDUE GOL D1538
09
AC9
SOFTWARE
TYR A:299 , ASN A:351 , HOH A:2457 , HOH A:2459 , HOH A:2460 , SER D:272
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 351 RESIDUES 1535 TO 1536
10
BC1
SOFTWARE
SER A:111 , ALA A:112 , TYR B:299 , ASN B:351 , HOH B:2351
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 351 RESIDUES 1535 TO 1536
11
BC2
SOFTWARE
TYR C:299 , ASN C:351 , HOH C:2225
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 351 RESIDUES 1535 TO 1536
12
BC3
SOFTWARE
TYR D:299 , ASN D:351 , GLN D:357 , HOH D:2344
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 351 RESIDUES 1535 TO 1536
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:95-105,B:95-105,C:95-105,D:95-10...)
2: CARBOXYLESTERASE_B_1 (A:196-211,B:196-211,C:196-211,D:19...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
LIP2_DIURU
109-119
4
A:95-105
B:95-105
C:95-105
D:95-105
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
LIP2_DIURU
210-225
4
A:196-211
B:196-211
C:196-211
D:196-211
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gz7a_ (A:)
1b: SCOP_d1gz7b_ (B:)
1c: SCOP_d1gz7c_ (C:)
1d: SCOP_d1gz7d_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Fungal lipases
(53)
Protein domain
:
Type-B carboxylesterase/lipase
(11)
Candida rugosa, lipase 2 isoform [TaxId: 5481]
(1)
1a
d1gz7a_
A:
1b
d1gz7b_
B:
1c
d1gz7c_
C:
1d
d1gz7d_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1gz7A00 (A:1-534)
1b: CATH_1gz7B00 (B:1-534)
1c: CATH_1gz7C00 (C:1-534)
1d: CATH_1gz7D00 (D:1-534)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Yeast (Candida rugosa)
(1)
1a
1gz7A00
A:1-534
1b
1gz7B00
B:1-534
1c
1gz7C00
C:1-534
1d
1gz7D00
D:1-534
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (363 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (94 KB)
Header - Biol.Unit 2
Biol.Unit 3 (93 KB)
Header - Biol.Unit 3
Biol.Unit 4 (93 KB)
Header - Biol.Unit 4
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