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1GYR
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
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(1)
Title
:
MUTANT FORM OF ENOYL THIOESTER REDUCTASE FROM CANDIDA TROPICALIS
Authors
:
T. T. Airenne, J. M. Torkko, S. Van Der Plas, R. T. Sormunen, A. J. Kastaniotis, R. K. Wierenga, J. K. Hiltunen
Date
:
29 Apr 02 (Deposition) - 13 Mar 03 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. T. Airenne, J. M. Torkko, S. Van Der Plas, R. T. Sormunen, A. J. Kastaniotis, R. K. Wierenga, J. K. Hiltunen
Structure-Function Analysis Of Enoyl Thioester Reductase Involved In Mitochondrial Maintenance
J. Mol. Biol. V. 327 47 2003
[
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:197 , GLY A:198 , THR A:199 , VAL A:220 , ILE A:221 , ARG A:222 , ARG A:224
BINDING SITE FOR RESIDUE SO4 A1390
02
AC2
SOFTWARE
PRO A:69 , ASN A:172 , ALA A:201 , LYS A:381 , HOH A:2053 , HOH A:2054
BINDING SITE FOR RESIDUE SO4 A1391
03
AC3
SOFTWARE
ARG A:285 , PRO A:307 , SER A:309 , HOH A:2055
BINDING SITE FOR RESIDUE SO4 A1392
04
AC4
SOFTWARE
GLY B:197 , GLY B:198 , THR B:199 , VAL B:220 , ILE B:221 , ARG B:222 , ARG B:224
BINDING SITE FOR RESIDUE SO4 B1391
05
AC5
SOFTWARE
PRO B:69 , ASN B:172 , ALA B:201 , LYS B:381 , HOH B:2042 , HOH B:2043
BINDING SITE FOR RESIDUE SO4 B1392
06
AC6
SOFTWARE
ARG B:285 , PRO B:307 , SER B:309
BINDING SITE FOR RESIDUE SO4 B1393
07
AC7
SOFTWARE
GLY C:197 , GLY C:198 , THR C:199 , VAL C:220 , ILE C:221 , ARG C:222 , ARG C:224
BINDING SITE FOR RESIDUE SO4 C1391
08
AC8
SOFTWARE
PRO C:69 , ASN C:172 , ALA C:201 , LYS C:381 , HOH C:2068
BINDING SITE FOR RESIDUE SO4 C1392
09
AC9
SOFTWARE
ARG C:285 , PRO C:307 , SER C:309
BINDING SITE FOR RESIDUE SO4 C1393
10
BC1
SOFTWARE
GLY A:254 , LYS A:258 , LYS A:286 , HOH A:2052
BINDING SITE FOR RESIDUE GOL A1387
11
BC2
SOFTWARE
ARG A:224 , ASN A:226 , VAL A:230
BINDING SITE FOR RESIDUE GOL A1388
12
BC3
SOFTWARE
LEU A:227 , VAL A:242 , ILE A:243 , GLN A:247
BINDING SITE FOR RESIDUE GOL A1389
13
BC4
SOFTWARE
VAL B:242 , THR B:244 , GLN B:247 , HOH B:2041
BINDING SITE FOR RESIDUE GOL B1387
14
BC5
SOFTWARE
ASN B:248 , ASN B:249 , ARG B:251 , ARG B:285 , LYS B:286 , HOH B:2024
BINDING SITE FOR RESIDUE GOL B1388
15
BC6
SOFTWARE
ARG B:224 , ASN B:226 , VAL B:230
BINDING SITE FOR RESIDUE GOL B1389
16
BC7
SOFTWARE
SER B:336 , ASN B:339
BINDING SITE FOR RESIDUE GOL B1390
17
BC8
SOFTWARE
HIS C:34 , LYS C:85
BINDING SITE FOR RESIDUE GOL C1387
18
BC9
SOFTWARE
LYS A:235 , ARG C:224 , PRO C:225 , ASN C:226 , LEU C:227 , ASP C:228 , HOH C:2066
BINDING SITE FOR RESIDUE GOL C1388
19
CC1
SOFTWARE
SER C:336 , ASN C:339
BINDING SITE FOR RESIDUE GOL C1389
20
CC2
SOFTWARE
LEU C:227 , VAL C:242 , GLN C:247
BINDING SITE FOR RESIDUE GOL C1390
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1gyra1 (A:23-160,A:350-386)
1b: SCOP_d1gyrb1 (B:23-160,B:350-386)
1c: SCOP_d1gyrc1 (C:23-160,C:350-386)
2a: SCOP_d1gyra2 (A:161-349)
2b: SCOP_d1gyrb2 (B:161-349)
2c: SCOP_d1gyrc2 (C:161-349)
View:
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Folds
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Superfamilies
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
2,4-dienoyl-CoA reductase
(5)
Yeast (Candida tropicalis) [TaxId: 5482]
(5)
1a
d1gyra1
A:23-160,A:350-386
1b
d1gyrb1
B:23-160,B:350-386
1c
d1gyrc1
C:23-160,C:350-386
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
2,4-dienoyl-CoA reductase
(5)
Yeast (Candida tropicalis) [TaxId: 5482]
(5)
2a
d1gyra2
A:161-349
2b
d1gyrb2
B:161-349
2c
d1gyrc2
C:161-349
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1gyrA02 (A:170-350)
1b: CATH_1gyrB02 (B:170-350)
1c: CATH_1gyrC02 (C:170-350)
2a: CATH_1gyrA01 (A:23-169,A:355-386)
2b: CATH_1gyrB01 (B:23-169,B:355-386)
2c: CATH_1gyrC01 (C:23-169,C:355-386)
View:
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Yeast (Candida tropicalis)
(4)
1a
1gyrA02
A:170-350
1b
1gyrB02
B:170-350
1c
1gyrC02
C:170-350
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Yeast (Candida tropicalis)
(4)
2a
1gyrA01
A:23-169,A:355-386
2b
1gyrB01
B:23-169,B:355-386
2c
1gyrC01
C:23-169,C:355-386
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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