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1GYN
Biol. Unit 1
Info
Asym.Unit (62 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CLASS II FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE WITH CADMIUM (NOT ZINC) IN THE ACTIVE SITE
Authors
:
D. R. Hall, L. E. Kemp, G. A. Leonard, A. Berry, W. N. Hunter
Date
:
27 Apr 02 (Deposition) - 26 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Lyase, Cadmium, Aldolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. R. Hall, L. E. Kemp, G. A. Leonard, K. Marshall, A. Berry, W. N. Hunter
The Organization Of Divalent Cations In The Active Site Of Cadmium Escherichia Coli Fructose 1, 6- Bisphosphate Aldolase
Acta Crystallogr. , Sect. D V. 59 611 2003
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:110 , HIS A:264 , HOH A:2055 , HOH A:2059 , HOH A:2060 , HOH A:2120
BINDING SITE FOR RESIDUE CD A 401
2
AC2
SOFTWARE
ASP A:144 , SER A:146 , GLU A:174 , HOH A:2079 , HOH A:2080
BINDING SITE FOR RESIDUE CD A 402
3
AC3
SOFTWARE
HIS A:91 , HIS A:129 , HOH A:2043 , HOH A:2045 , HOH A:2046
BINDING SITE FOR RESIDUE CD A 403
4
AC4
SOFTWARE
SER A:1 , ASN A:27 , GLU A:246 , HIS A:256
BINDING SITE FOR RESIDUE CD A 404
5
AC5
SOFTWARE
HIS A:252 , HOH A:2039 , HOH A:2098
BINDING SITE FOR RESIDUE CD A 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_II_1 (A:100-111)
2: ALDOLASE_CLASS_II_2 (A:171-176)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_II_1
PS00602
Fructose-bisphosphate aldolase class-II signature 1.
ALF_ECO57
101-112
2
A:100-111
ALF_ECOLI
101-112
2
A:100-111
ALF_SHIFL
101-112
2
A:100-111
2
ALDOLASE_CLASS_II_2
PS00806
Fructose-bisphosphate aldolase class-II signature 2.
ALF_ECO57
172-183
2
A:171-176
ALF_ECOLI
172-183
2
A:171-176
ALF_SHIFL
172-183
2
A:171-176
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
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1a: SCOP_d1gyna_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class II FBP aldolase
(9)
Protein domain
:
Fructose-bisphosphate aldolase (FBP aldolase)
(6)
Escherichia coli [TaxId: 562]
(4)
1a
d1gyna_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1gynA00 (A:1-358)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(44)
1a
1gynA00
A:1-358
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Pfam Domains
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Asym.Unit (62 KB)
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