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1GYC
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS
Authors
:
T. Choinowski, M. Antorini, K. Piontek
Date
:
23 Apr 02 (Deposition) - 22 Aug 02 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Laccase, Oxidoreductase, Diphenol Oxidase, Lignin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Piontek, M. Antorini, T. Choinowski
Crystal Structure Of A Laccase From The Fungus Trametes Versicolor At 1. 90-A Resolution Containing A Full Complement Of Coppers.
J. Biol. Chem. V. 277 37663 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
4
Ligand/Ion
COPPER (II) ION
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:66 , HIS A:109 , HIS A:454 , HOH A:2516
BINDING SITE FOR RESIDUE CU A1500
02
AC2
SOFTWARE
HIS A:111 , HIS A:398 , HIS A:400 , HIS A:452 , HOH A:2516
BINDING SITE FOR RESIDUE CU A1501
03
AC3
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:398 , HIS A:400 , HOH A:2107
BINDING SITE FOR RESIDUE CU A1502
04
AC4
SOFTWARE
HIS A:395 , CYS A:453 , HIS A:458 , PHE A:463
BINDING SITE FOR RESIDUE CU A1503
05
AC5
SOFTWARE
HOH A:2003 , HOH A:2589 , HOH A:2590
BINDING SITE FOR RESIDUE IPA A1513
06
AC6
SOFTWARE
ARG A:161 , ASN A:336 , GLU A:460 , HOH A:2419 , HOH A:2423
BINDING SITE FOR RESIDUE IPA A1514
07
AC7
SOFTWARE
ARG A:22 , ASP A:23 , ASN A:54 , MET A:57 , HIS A:153 , THR A:154 , ALA A:155 , HOH A:2568 , HOH A:2570 , HOH A:2571 , HOH A:2572 , HOH A:2573 , HOH A:2574 , HOH A:2575 , HOH A:2576
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 54 RESIDUES 1504 TO 1505
08
AC8
SOFTWARE
GLY A:215 , ASN A:217 , VAL A:297 , HOH A:2302 , HOH A:2577
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 217 RESIDUES 1506 TO 1507
09
AC9
SOFTWARE
ASN A:249 , ASN A:251 , HOH A:2578 , HOH A:2579 , HOH A:2580
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 251 RESIDUES 1508 TO 1508
10
BC1
SOFTWARE
ASN A:333 , THR A:335 , ASN A:336 , PHE A:338 , HOH A:2581 , HOH A:2582 , HOH A:2584
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 333 RESIDUES 1509 TO 1509
11
BC2
SOFTWARE
ASN A:340 , ASN A:341
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 341 RESIDUES 1512 TO 1512
12
BC3
SOFTWARE
ASN A:327 , THR A:383 , ASN A:436 , HOH A:2411 , HOH A:2585 , HOH A:2587 , HOH A:2588
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 436 RESIDUES 1510 TO 1511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:104-124)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC2_TRAVE
124-144
1
A:104-124
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1gyca1 (A:1-130)
1b: SCOP_d1gyca2 (A:131-300)
1c: SCOP_d1gyca3 (A:301-499)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Trametes versicolor, laccase 2 [TaxId: 5325]
(1)
1a
d1gyca1
A:1-130
1b
d1gyca2
A:131-300
1c
d1gyca3
A:301-499
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1gycA01 (A:1-132)
1b: CATH_1gycA02 (A:133-309)
1c: CATH_1gycA03 (A:310-499)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
White-rot fungus (Trametes versicolor)
(1)
1a
1gycA01
A:1-132
1b
1gycA02
A:133-309
1c
1gycA03
A:310-499
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (101 KB)
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