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1GYA
Asym. Unit
Info
Asym.Unit (601 KB)
Biol.Unit 1 (35 KB)
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Models
(18 )
Title
:
N-GLYCAN AND POLYPEPTIDE NMR SOLUTION STRUCTURES OF THE ADHESION DOMAIN OF HUMAN CD2
Authors
:
D. F. Wyss, J. S. Choi, G. Wagner
Date
:
26 May 95 (Deposition) - 08 Nov 96 (Release) - 13 Jul 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (18 x)
Biol. Unit 1: A (1x)
Keywords
:
Cell Surface Adhesion Receptor, Immunoglobulin Superfamily V-Set Domain, T Lymphocyte Adhesion Glycoprotein, Adhesion Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. F. Wyss, J. S. Choi, J. Li, M. H. Knoppers, K. J. Willis, A. R. Arulanandam, A. Smolyar, E. L. Reinherz, G. Wagner
Conformation And Function Of The N-Linked Glycan In The Adhesion Domain Of Human Cd2.
Science V. 269 1273 1995
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:65 , THR A:67 , NAG A:107
BINDING SITE FOR RESIDUE NAG A 106
2
AC2
SOFTWARE
NAG A:106 , BMA A:108
BINDING SITE FOR RESIDUE NAG A 107
3
AC3
SOFTWARE
NAG A:107 , MAN A:109 , MAN A:111
BINDING SITE FOR RESIDUE BMA A 108
4
AC4
SOFTWARE
BMA A:108 , MAN A:110
BINDING SITE FOR RESIDUE MAN A 109
5
AC5
SOFTWARE
MAN A:109
BINDING SITE FOR RESIDUE MAN A 110
6
AC6
SOFTWARE
BMA A:108 , MAN A:112 , MAN A:113
BINDING SITE FOR RESIDUE MAN A 111
7
AC7
SOFTWARE
LYS A:71 , MAN A:111
BINDING SITE FOR RESIDUE MAN A 112
8
AC8
SOFTWARE
MAN A:111 , MAN A:114
BINDING SITE FOR RESIDUE MAN A 113
9
AC9
SOFTWARE
MAN A:113
BINDING SITE FOR RESIDUE MAN A 114
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.2a (A:1-104)
Exon 1.3 (A:104-105)
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369478
1a
ENSE00001450130
chr1:
117297007-117297175
169
CD2_HUMAN
1-21
21
0
-
-
1.2a
ENST00000369478
2a
ENSE00000785006
chr1:
117297253-117297573
321
CD2_HUMAN
21-128
108
1
A:1-104
104
1.3
ENST00000369478
3
ENSE00000785007
chr1:
117303024-117303254
231
CD2_HUMAN
128-205
78
1
A:104-105
2
1.4
ENST00000369478
4
ENSE00000785008
chr1:
117307106-117307228
123
CD2_HUMAN
205-246
42
0
-
-
1.5
ENST00000369478
5
ENSE00001141790
chr1:
117311086-117311850
765
CD2_HUMAN
246-351
106
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gyaa_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
CD2, first domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1gyaa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gyaA00 (A:1-105)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1gyaA00
A:1-105
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (601 KB)
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