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1GXS
Asym. Unit
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Asym.Unit (153 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM SORGHUM BICOLOR IN COMPLEX WITH INHIBITOR BENZOIC ACID: A NOVEL CYANOGENIC ENZYME
Authors
:
H. Lauble, B. Miehlich, S. Foerster, H. Wajant, F. Effenberger
Date
:
11 Apr 02 (Deposition) - 01 Oct 02 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lyase, Inhibitor Complex, Cyanogenesis Mechanism
(Keyword Search:
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Reference
:
H. Lauble, B. Miehlich, S. Foerster, H. Wajant, F. Effenberger
Crystal Structure Of Hydroxynitrile Lyase From Sorghum Bicolor In Complex With The Inhibitor Benzoic Acid: A Novel Cyanogenic Enzyme
Biochemistry V. 41 12043 2002
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
1b: BENZOIC ACID (BEZb)
2a: DECANOIC ACID (DKAa)
2b: DECANOIC ACID (DKAb)
3a: BETA-L-FUCOSE (FULa)
3b: BETA-L-FUCOSE (FULb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
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No.
Name
Count
Type
Full Name
1
BEZ
2
Ligand/Ion
BENZOIC ACID
2
DKA
2
Ligand/Ion
DECANOIC ACID
3
FUL
2
Ligand/Ion
BETA-L-FUCOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:63 , PRO A:64 , ASP A:126 , SER A:158 , HIS A:160 , PHE A:161 , HOH A:2091
BINDING SITE FOR RESIDUE BEZ A 601
2
AC2
SOFTWARE
ASN A:61 , GLY A:62 , GLU A:157 , ASN A:249 , TYR A:251 , TRP A:270 , HIS B:414
BINDING SITE FOR RESIDUE DKA A 701
3
AC3
SOFTWARE
GLY C:63 , PRO C:64 , ASP C:126 , SER C:158 , PHE C:161 , HOH C:2096
BINDING SITE FOR RESIDUE BEZ C 602
4
AC4
SOFTWARE
ASN C:61 , GLY C:62 , GLU C:157 , ASN C:249 , TYR C:251 , TRP C:270 , HIS D:414 , LEU D:415
BINDING SITE FOR RESIDUE DKA C 702
5
AC5
SOFTWARE
GLY A:36 , TYR A:115 , ASN A:117 , SER B:312 , ILE B:314
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 117 RESIDUES 1117 TO 1119
6
AC6
SOFTWARE
GLY A:112 , GLN B:304 , ASN B:310 , GLY B:313 , VAL B:315 , TYR B:317 , PRO B:318 , TRP B:319 , HOH B:2073
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 310 RESIDUES 1310 TO 1310
7
AC7
SOFTWARE
GLY C:36 , TYR C:115 , ASN C:117 , HOH C:2009 , VAL D:311 , SER D:312 , ILE D:314
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 117 RESIDUES 1117 TO 1119
8
AC8
SOFTWARE
PHE C:113 , GLN D:304 , ASN D:310 , GLY D:313 , VAL D:315 , TYR D:317 , PRO D:318 , TRP D:319 , HOH D:2071
BINDING SITE FOR MONO-SACCHARIDE NAG D1310 BOUND TO ASN D 310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_SER_HIS (B:404-421,D:404-421)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_SER_HIS
PS00560
Serine carboxypeptidases, histidine active site.
HNLS_SORBI
459-476
2
B:404-421
D:404-421
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gxs_1 (A:,B:)
1b: SCOP_d1gxs_2 (C:,D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Serine carboxypeptidase-like
(15)
Protein domain
:
Hydroxynitrile lyase
(1)
Sorghum (Sorghum bicolor) [TaxId: 4558]
(1)
1a
d1gxs.1
A:,B:
1b
d1gxs.2
C:,D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gxsA00 (A:4-270)
1b: CATH_1gxsC00 (C:4-270)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Sorghum (Sorghum bicolor)
(1)
1a
1gxsA00
A:4-270
1b
1gxsC00
C:4-270
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Pfam Domains
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Asymmetric Unit 1
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