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Biol. Unit 2
Info
Asym.Unit (213 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM MELANOCARPUS ALBOMYCES IN FOUR COPPER FORM
Authors
:
N. Hakulinen, L. -L. Kiiskinen, K. Kruus, M. Saloheimo, A. Koivula, J. Rouvinen
Date
:
01 Mar 02 (Deposition) - 31 Jul 02 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Laccase, Multi-Copper Oxidases, Oxygen Reduction, Ascomycete, C-Terminal Plug
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Hakulinen, L. -L. Kiiskinen, K. Kruus, M. Saloheimo, A. Paananen, A. Koivula, J. Rouvinen
Crystal Structure Of A Laccase From Melanocarpus Albomyces With An Intact Trinuclear Copper Site
Nat. Struct. Biol. V. 9 601 2002
[
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
6a: OXYGEN MOLECULE (OXYa)
6b: OXYGEN MOLECULE (OXYb)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
OXY
1
Ligand/Ion
OXYGEN MOLECULE
7
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ARG A:128 , ARG A:130 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A1587
02
AC7
SOFTWARE
ARG A:520 , ARG A:527 , HOH A:2405 , HOH A:2406 , ARG B:520 , ARG B:527
BINDING SITE FOR RESIDUE SO4 A1588
03
AC8
SOFTWARE
HIS B:431 , CYS B:503 , HIS B:508 , LEU B:513
BINDING SITE FOR RESIDUE CU B1560
04
AC9
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , OXY B:620
BINDING SITE FOR RESIDUE CU B1561
05
BC1
SOFTWARE
HIS B:95 , HIS B:138 , HIS B:504 , OXY B:620
BINDING SITE FOR RESIDUE CU B1562
06
BC2
SOFTWARE
HIS B:93 , HIS B:434 , HIS B:436 , OXY B:620 , CL B:1564
BINDING SITE FOR RESIDUE CU B1563
07
BC3
SOFTWARE
HIS B:93 , GLY B:96 , HIS B:434 , HIS B:436 , CU B:1563
BINDING SITE FOR RESIDUE CL B1564
08
BC4
SOFTWARE
ARG A:492 , ARG B:128 , ARG B:130
BINDING SITE FOR RESIDUE SO4 B1584
09
BC6
SOFTWARE
HIS B:93 , HIS B:95 , HIS B:138 , HIS B:140 , HIS B:434 , HIS B:436 , HIS B:502 , HIS B:504 , CU B:1561 , CU B:1562 , CU B:1563
BINDING SITE FOR RESIDUE OXY B 620
10
BC7
SOFTWARE
ASN A:39 , ASN A:84 , HOH A:2381 , HOH A:2382 , GLU B:78 , ARG B:126
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 39 RESIDUES 1566 TO 1566
11
CC2
SOFTWARE
TRP A:287 , ASN A:289 , HIS A:305 , ALA A:307 , GLU A:323 , HOH A:2232 , HOH A:2393 , HOH A:2394 , HOH A:2397 , HOH A:2398 , HOH A:2399 , ASP B:263 , VAL B:328
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 289 RESIDUES 1577 TO 1581
12
CC4
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , SER A:398 , SER B:8 , GLY B:222 , ARG B:224
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 396 RESIDUES 1584 TO 1585
13
CC5
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , ASN B:84 , HOH B:2362 , HOH B:2363
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 39 RESIDUES 1566 TO 1566
14
CC6
SOFTWARE
GLU B:55 , LYS B:56 , MET B:58 , THR B:87 , ASN B:88 , ARG B:178 , ALA B:179 , ASP B:181 , ASP B:182 , HIS B:185 , ASN B:550 , TYR B:552 , HOH B:2038 , HOH B:2082 , HOH B:2153 , HOH B:2155 , HOH B:2357 , HOH B:2364 , HOH B:2365 , HOH B:2366 , HOH B:2369 , HOH B:2370
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 88 RESIDUES 1567 TO 1572
15
CC7
SOFTWARE
LEU B:167 , VAL B:169 , PHE B:170 , ASN B:201 , VAL B:217 , HOH B:2387
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 201 RESIDUES 1582 TO 1582
16
CC8
SOFTWARE
ASN B:216 , THR B:218 , HIS B:311 , GLY B:314 , GLY B:317 , HOH B:2229 , HOH B:2230 , HOH B:2372
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 216 RESIDUES 1573 TO 1574
17
CC9
SOFTWARE
ASN B:244 , ARG B:281 , HOH B:2389
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 244 RESIDUES 1583 TO 1583
18
DC1
SOFTWARE
ASP A:263 , VAL A:328 , TRP B:287 , ASN B:289 , HIS B:305 , ALA B:307 , GLU B:323 , HOH B:2373 , HOH B:2376 , HOH B:2379 , HOH B:2380 , HOH B:2381
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 289 RESIDUES 1575 TO 1579
19
DC2
SOFTWARE
PRO B:355 , ASP B:356 , THR B:358 , ASN B:376 , HOH B:2383 , HOH B:2384
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 376 RESIDUES 1580 TO 1580
20
DC3
SOFTWARE
LYS B:386 , TYR B:391 , ASN B:396 , SER B:398 , HOH B:2385 , HOH B:2386
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 396 RESIDUES 1581 TO 1581
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (B:497-517)
2: MULTICOPPER_OXIDASE2 (B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
1
-
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
1
-
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1gw0a1 (A:1-162)
1b: SCOP_d1gw0a2 (A:163-343)
1c: SCOP_d1gw0a3 (A:344-559)
1d: SCOP_d1gw0b1 (B:1-162)
1e: SCOP_d1gw0b2 (B:163-343)
1f: SCOP_d1gw0b3 (B:344-559)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d1gw0a1
A:1-162
1b
d1gw0a2
A:163-343
1c
d1gw0a3
A:344-559
1d
d1gw0b1
B:1-162
1e
d1gw0b2
B:163-343
1f
d1gw0b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1gw0A01 (A:1-158)
1b: CATH_1gw0B01 (B:1-158)
1c: CATH_1gw0A02 (A:159-342)
1d: CATH_1gw0B02 (B:159-342)
1e: CATH_1gw0A03 (A:343-559)
1f: CATH_1gw0B03 (B:343-559)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285
(1)
1a
1gw0A01
A:1-158
1b
1gw0B01
B:1-158
1c
1gw0A02
A:159-342
1d
1gw0B02
B:159-342
1e
1gw0A03
A:343-559
1f
1gw0B03
B:343-559
[
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Pfam Domains
(0, 0)
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all PFAM domains
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