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1GUY
Biol. Unit 1
Info
Asym.Unit (104 KB)
Biol.Unit 1 (194 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES
Authors
:
B. Dalhus, M. Sarinen, U. H. Sauer, P. Eklund, K. Johansson, A. Karlsson, S. Ramaswamy, A. Bjork, B. Synstad, K. Naterstad, R. Sirevag, H. Eklund
Date
:
04 Feb 02 (Deposition) - 15 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (2x)
Keywords
:
Dehydrogenase, Oxidoreductase, Tricarboxylic Acid Cycle, Nad
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Reference
:
B. Dalhus, M. Saarinen, U. H. Sauer, P. Eklund, K. Johansson, A. Karlsson, S. Ramaswamy, A. Bjork, B. Synstad, K. Naterstad, R. Sirevag, H. Eklund
Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases
J. Mol. Biol. V. 318 707 2002
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:165 , HOH A:2010 , HOH C:2106
BINDING SITE FOR RESIDUE CD A1308
2
AC2
SOFTWARE
GLU A:195 , GLU A:281 , HOH A:2097 , HOH A:2098 , GLU C:281 , HOH C:2124
BINDING SITE FOR RESIDUE CD A1309
3
AC3
SOFTWARE
ASP A:200 , ASP A:243 , GLU A:277 , HOH A:2143
BINDING SITE FOR RESIDUE CD A1310
4
AC4
SOFTWARE
HOH A:2121 , HOH A:2123 , GLU C:165
BINDING SITE FOR RESIDUE CD C1308
5
AC5
SOFTWARE
GLU A:159 , GLU C:159 , HOH C:2064
BINDING SITE FOR RESIDUE CD C1309
6
AC6
SOFTWARE
GLY A:11 , PHE A:12 , VAL A:13 , ASP A:33 , ILE A:34 , VAL A:35 , SER A:78 , GLY A:79 , CYS A:102 , VAL A:118 , ASN A:119 , ASN A:120 , LEU A:147 , HIS A:175 , ALA A:225 , PRO A:229 , HOH A:2074 , HOH A:2167 , HOH A:2168 , HOH A:2169 , HOH A:2170 , HOH A:2171 , HOH A:2172
BINDING SITE FOR RESIDUE NAD A1307
7
AC7
SOFTWARE
GLY C:11 , PHE C:12 , VAL C:13 , ASP C:33 , ILE C:34 , VAL C:35 , TYR C:65 , THR C:77 , SER C:78 , GLY C:79 , CYS C:102 , ASN C:119 , ASN C:120 , GLN C:143 , LEU C:147 , HIS C:175 , ALA C:225 , PRO C:229 , HOH C:2054 , HOH C:2140 , HOH C:2141 , HOH C:2142
BINDING SITE FOR RESIDUE NAD C1307
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1guya2 (A:144-306)
1b: SCOP_d1guyc2 (C:144-306)
2a: SCOP_d1guya1 (A:1-143)
2b: SCOP_d1guyc1 (C:1-143)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Malate dehydrogenase
(37)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
1a
d1guya2
A:144-306
1b
d1guyc2
C:144-306
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Malate dehydrogenase
(39)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
2a
d1guya1
A:1-143
2b
d1guyc1
C:1-143
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1guyC01 (C:1-144)
1b: CATH_1guyA01 (A:1-144)
2a: CATH_1guyA02 (A:145-305)
2b: CATH_1guyC02 (C:145-305)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
1a
1guyC01
C:1-144
1b
1guyA01
A:1-144
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
2a
1guyA02
A:145-305
2b
1guyC02
C:145-305
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Pfam Domains
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Asymmetric Unit 1
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