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1GUQ
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (129 KB)
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(1)
Title
:
STRUCTURE OF NUCLEOTIDYLTRANSFERASE COMPLEXED WITH UDP-GLUCOSE
Authors
:
J. B. Thoden, I. Rayment, H. Holden
Date
:
23 Oct 96 (Deposition) - 12 Nov 97 (Release) - 15 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Nucleotidyltransferase, Galactose Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, F. J. Ruzicka, P. A. Frey, I. Rayment, H. M. Holden
Structural Analysis Of The H166G Site-Directed Mutant Of Galactose-1-Phosphate Uridylyltransferase Complexed With Either Udp-Glucose Or Udp-Galactose: Detailed Description O The Nucleotide Sugar Binding Site.
Biochemistry V. 36 1212 1997
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGa)
3b: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGb)
3c: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGc)
3d: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
K
4
Ligand/Ion
POTASSIUM ION
3
UPG
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCOSE
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:52 , CYS A:55 , HIS A:115 , HIS A:164
BINDING SITE FOR RESIDUE ZN A 350
02
AC2
SOFTWARE
GLU A:182 , HIS A:281 , HIS A:296 , HIS A:298
BINDING SITE FOR RESIDUE FE A 351
03
AC3
SOFTWARE
ASN A:153 , GLY A:166 , HOH A:354 , HOH A:382 , HOH A:394 , HOH A:492 , HOH A:503
BINDING SITE FOR RESIDUE K A 353
04
AC4
SOFTWARE
CYS B:52 , CYS B:55 , HIS B:115 , HIS B:164
BINDING SITE FOR RESIDUE ZN B 350
05
AC5
SOFTWARE
GLU B:182 , HIS B:281 , HIS B:296 , HIS B:298
BINDING SITE FOR RESIDUE FE B 351
06
AC6
SOFTWARE
ASN B:153 , GLY B:166 , HOH B:360 , HOH B:372 , HOH B:427 , HOH B:479
BINDING SITE FOR RESIDUE K B 353
07
AC7
SOFTWARE
CYS C:52 , CYS C:55 , HIS C:115 , HIS C:164
BINDING SITE FOR RESIDUE ZN C 350
08
AC8
SOFTWARE
LEU C:17 , GLU C:182 , HIS C:281 , HIS C:296 , HIS C:298
BINDING SITE FOR RESIDUE FE C 351
09
AC9
SOFTWARE
ASN C:153 , GLY C:166 , HOH C:877 , HOH C:899 , HOH C:925 , HOH C:957
BINDING SITE FOR RESIDUE K C 353
10
BC1
SOFTWARE
CYS D:52 , CYS D:55 , HIS D:115 , HIS D:164
BINDING SITE FOR RESIDUE ZN D 350
11
BC2
SOFTWARE
GLU D:182 , HIS D:281 , HIS D:296 , HIS D:298
BINDING SITE FOR RESIDUE FE D 351
12
BC3
SOFTWARE
ASN D:153 , GLY D:166 , HOH D:743 , HOH D:750 , HOH D:955 , HOH D:1050
BINDING SITE FOR RESIDUE K D 353
13
BC4
SOFTWARE
PHE A:53 , ARG A:60 , VAL A:61 , PHE A:75 , ASN A:77 , ASP A:78 , ASN A:153 , GLY A:159 , CYS A:160 , SER A:161 , GLN A:168 , HOH A:354 , HOH A:357 , HOH A:492 , ARG B:28 , ARG B:31 , TRP B:33 , LYS B:311 , PHE B:312 , VAL B:314 , GLY B:315 , TYR B:316 , GLU B:317 , GLN B:323 , HOH B:438
BINDING SITE FOR RESIDUE UPG A 352
14
BC5
SOFTWARE
ARG A:28 , ARG A:31 , TRP A:33 , LYS A:311 , PHE A:312 , VAL A:314 , GLY A:315 , TYR A:316 , GLU A:317 , GLN A:323 , HOH A:526 , PHE B:53 , ARG B:60 , VAL B:61 , PHE B:75 , ASN B:77 , ASP B:78 , ASN B:153 , GLY B:159 , CYS B:160 , SER B:161 , GLN B:168 , HOH B:355 , HOH B:413 , HOH B:427
BINDING SITE FOR RESIDUE UPG B 352
15
BC6
SOFTWARE
PHE C:53 , VAL C:61 , PHE C:75 , ASN C:77 , ASP C:78 , ASN C:153 , GLY C:159 , CYS C:160 , SER C:161 , GLN C:168 , TRP C:170 , HOH C:755 , HOH C:812 , HOH C:899 , HOH C:957 , ARG D:28 , ARG D:31 , TRP D:33 , LYS D:311 , PHE D:312 , VAL D:314 , GLY D:315 , TYR D:316 , GLU D:317 , GLN D:323
BINDING SITE FOR RESIDUE UPG C 352
16
BC7
SOFTWARE
ARG C:28 , ARG C:31 , TRP C:33 , LYS C:311 , PHE C:312 , VAL C:314 , GLY C:315 , TYR C:316 , GLU C:317 , GLN C:323 , HOH C:777 , HOH C:811 , PHE D:53 , ARG D:60 , VAL D:61 , PHE D:75 , ASN D:77 , ASP D:78 , PHE D:79 , PHE D:151 , ASN D:153 , GLY D:159 , CYS D:160 , SER D:161 , GLN D:168 , HOH D:836 , HOH D:1050
BINDING SITE FOR RESIDUE UPG D 352
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAL_P_UDP_TRANSF_I (A:151-168,B:151-168,C:151-168,D:15...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAL_P_UDP_TRANSF_I
PS00117
Galactose-1-phosphate uridyl transferase family 1 active site signature.
GAL7_ECOLI
151-168
4
A:151-168
B:151-168
C:151-168
D:151-168
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1guqa1 (A:2-177)
1b: SCOP_d1guqa2 (A:178-348)
1c: SCOP_d1guqb1 (B:2-177)
1d: SCOP_d1guqb2 (B:178-345)
1e: SCOP_d1guqc1 (C:2-177)
1f: SCOP_d1guqc2 (C:178-345)
1g: SCOP_d1guqd1 (D:2-177)
1h: SCOP_d1guqd2 (D:178-345)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
HIT-like
(73)
Superfamily
:
HIT-like
(67)
Family
:
Hexose-1-phosphate uridylyltransferase
(9)
Protein domain
:
Galactose-1-phosphate uridylyltransferase
(9)
Escherichia coli [TaxId: 562]
(4)
1a
d1guqa1
A:2-177
1b
d1guqa2
A:178-348
1c
d1guqb1
B:2-177
1d
d1guqb2
B:178-345
1e
d1guqc1
C:2-177
1f
d1guqc2
C:178-345
1g
d1guqd1
D:2-177
1h
d1guqd2
D:178-345
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1guqA02 (A:44-175)
1b: CATH_1guqB01 (B:176-345)
1c: CATH_1guqC01 (C:176-345)
1d: CATH_1guqD01 (D:176-345)
1e: CATH_1guqA01 (A:176-347)
1f: CATH_1guqB02 (B:44-175)
1g: CATH_1guqC02 (C:44-175)
1h: CATH_1guqD02 (D:44-175)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
HIT family, subunit A
(33)
Homologous Superfamily
:
HIT family, subunit A
(27)
Escherichia coli. Organism_taxid: 562
(2)
1a
1guqA02
A:44-175
1b
1guqB01
B:176-345
1c
1guqC01
C:176-345
1d
1guqD01
D:176-345
1e
1guqA01
A:176-347
1f
1guqB02
B:44-175
1g
1guqC02
C:44-175
1h
1guqD02
D:44-175
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Pfam Domains
(0, 0)
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