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1GUL
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
HUMAN GLUTATHIONE TRANSFERASE A4-4 COMPLEX WITH IODOBENZYL GLUTATHIONE
Authors
:
C. M. Bruns, I. Hubatsch, M. Ridderstrom, B. Mannervik, J. A. Tainer
Date
:
10 Jun 98 (Deposition) - 27 Jan 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,I,J (1x)
Biol. Unit 2: C,D,K,L (1x)
Biol. Unit 3: E,F,M,N (1x)
Biol. Unit 4: G,H,O,P (1x)
Keywords
:
Oxidative Stress, Alkenal Degradation, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Bruns, I. Hubatsch, M. Ridderstrom, B. Mannervik, J. A. Tainer
Human Glutathione Transferase A4-4 Crystal Structures And Mutagenesis Reveal The Basis Of High Catalytic Efficiency With Toxic Lipid Peroxidation Products
J. Mol. Biol. V. 288 427 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: L-GLUTAMIC ACID (GGLa)
1b: L-GLUTAMIC ACID (GGLb)
1c: L-GLUTAMIC ACID (GGLc)
1d: L-GLUTAMIC ACID (GGLd)
1e: L-GLUTAMIC ACID (GGLe)
1f: L-GLUTAMIC ACID (GGLf)
1g: L-GLUTAMIC ACID (GGLg)
1h: L-GLUTAMIC ACID (GGLh)
2a: S-(2-IODOBENZYL)-L-CYSTEINE (ICYa)
2b: S-(2-IODOBENZYL)-L-CYSTEINE (ICYb)
2c: S-(2-IODOBENZYL)-L-CYSTEINE (ICYc)
2d: S-(2-IODOBENZYL)-L-CYSTEINE (ICYd)
2e: S-(2-IODOBENZYL)-L-CYSTEINE (ICYe)
2f: S-(2-IODOBENZYL)-L-CYSTEINE (ICYf)
2g: S-(2-IODOBENZYL)-L-CYSTEINE (ICYg)
2h: S-(2-IODOBENZYL)-L-CYSTEINE (ICYh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GGL
8
Mod. Amino Acid
L-GLUTAMIC ACID
2
ICY
8
Mod. Amino Acid
S-(2-IODOBENZYL)-L-CYSTEINE
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: GTA (AUTHOR)
02: GTB (AUTHOR)
03: GTC (AUTHOR)
04: GTD (AUTHOR)
05: GTE (AUTHOR)
06: GTF (AUTHOR)
07: GTG (AUTHOR)
08: GTH (AUTHOR)
09: HTA (AUTHOR)
10: HTB (AUTHOR)
11: HTC (AUTHOR)
12: HTD (AUTHOR)
13: HTE (AUTHOR)
14: HTF (AUTHOR)
15: HTG (AUTHOR)
16: HTH (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
GTA
AUTHOR
TYR A:9 , ARG A:15 , LEU A:41 , GLN A:45 , GLN A:54 , VAL A:55 , GLN A:67 , THR A:68 , ASP A:101 , ARG A:131 , PHE A:220
GLUTATHIONE BINDING SITE.
02
GTB
AUTHOR
TYR B:9 , ARG B:15 , LEU B:41 , GLN B:45 , GLN B:54 , VAL B:55 , GLN B:67 , THR B:68 , ASP B:101 , ARG B:131 , PHE B:220
GLUTATHIONE BINDING SITE.
03
GTC
AUTHOR
TYR C:9 , ARG C:15 , LEU C:41 , GLN C:45 , GLN C:54 , VAL C:55 , GLN C:67 , THR C:68 , ASP C:101 , ARG C:131 , PHE C:220
GLUTATHIONE BINDING SITE.
04
GTD
AUTHOR
TYR D:9 , ARG D:15 , LEU D:41 , GLN D:45 , GLN D:54 , VAL D:55 , GLN D:67 , THR D:68 , ASP D:101 , ARG D:131 , PHE D:220
GLUTATHIONE BINDING SITE.
05
GTE
AUTHOR
TYR E:9 , ARG E:15 , LEU E:41 , GLN E:45 , GLN E:54 , VAL E:55 , GLN E:67 , THR E:68 , ASP E:101 , ARG E:131 , PHE E:220
GLUTATHIONE BINDING SITE.
06
GTF
AUTHOR
TYR F:9 , ARG F:15 , LEU F:41 , GLN F:45 , GLN F:54 , VAL F:55 , GLN F:67 , THR F:68 , ASP F:101 , ARG F:131 , PHE F:220
GLUTATHIONE BINDING SITE.
07
GTG
AUTHOR
TYR G:9 , ARG G:15 , LEU G:41 , GLN G:45 , GLN G:54 , VAL G:55 , GLN G:67 , THR G:68 , ASP G:101 , ARG G:131 , PHE G:220
GLUTATHIONE BINDING SITE.
08
GTH
AUTHOR
TYR H:9 , ARG H:15 , LEU H:41 , GLN H:45 , GLN H:54 , VAL H:55 , GLN H:67 , THR H:68 , ASP H:101 , ARG H:131 , PHE H:220
GLUTATHIONE BINDING SITE.
09
HTA
AUTHOR
GLY A:14 , GLU A:104 , ILE A:107 , MET A:108 , PHE A:111 , TYR A:212 , VAL A:216 , TYR A:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
10
HTB
AUTHOR
GLY B:14 , GLU B:104 , ILE B:107 , MET B:108 , PHE B:111 , TYR B:212 , VAL B:216 , TYR B:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
11
HTC
AUTHOR
GLY C:14 , GLU C:104 , ILE C:107 , MET C:108 , PHE C:111 , TYR C:212 , VAL C:216 , TYR C:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
12
HTD
AUTHOR
GLY D:14 , GLU D:104 , ILE D:107 , MET D:108 , PHE D:111 , TYR D:212 , VAL D:216 , TYR D:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
13
HTE
AUTHOR
GLY E:14 , GLU E:104 , ILE E:107 , MET E:108 , PHE E:111 , TYR E:212 , VAL E:216 , TYR E:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
14
HTF
AUTHOR
GLY F:14
ELECTROPHILIC SUBSTRATE BINDING SITE.
15
HTG
AUTHOR
GLY G:14 , GLU G:104 , ILE G:107 , MET G:108 , PHE G:111 , TYR G:212 , VAL G:216 , TYR G:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
16
HTH
AUTHOR
GLY H:14 , GLU H:104 , ILE H:107 , MET H:108 , PHE H:111 , TYR H:212 , VAL H:216 , TYR H:217
ELECTROPHILIC SUBSTRATE BINDING SITE.
[
close Site info
]
SAPs(SNPs)/Variants
(2, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022210 (L100P, chain A/B/C/D/E/F/G/H, )
2: VAR_022211 (T163A, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022210
L
100
P
GSTA4_HUMAN
Polymorphism
45551133
A/B/C/D/E/F/G/H
L
100
P
2
UniProt
VAR_022211
T
163
A
GSTA4_HUMAN
Polymorphism
4147617
A/B/C/D/E/F/G/H
T
163
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:85-208,B:85-208,C:85-208,D:85-20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA4_HUMAN
85-208
8
A:85-208
B:85-208
C:85-208
D:85-208
E:85-208
F:85-208
G:85-208
H:85-208
[
close PROSITE info
]
Exons
(6, 48)
Info
All Exons
Exon 1.3b (A:4-29 | B:4-29 | C:4-29 | D:4-29 ...)
Exon 1.4b (A:30-47 | B:30-47 | C:30-47 | D:30...)
Exon 1.5 (A:47-91 | B:47-91 | C:47-91 | D:47...)
Exon 1.6 (A:91-138 | B:91-138 | C:91-138 | D...)
Exon 1.7 (A:139-182 | B:139-182 | C:139-182 ...)
Exon 1.8c (A:183-220 | B:183-220 | C:183-220 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8c
7: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370963
1a
ENSE00001454017
chr6:
52860176-52860047
130
GSTA4_HUMAN
-
0
0
-
-
1.3b
ENST00000370963
3b
ENSE00002148969
chr6:
52859059-52858955
105
GSTA4_HUMAN
1-29
29
8
A:4-29
B:4-29
C:4-29
D:4-29
E:4-29
F:4-29
G:4-29
H:4-29
26
26
26
26
26
26
26
26
1.4b
ENST00000370963
4b
ENSE00002179898
chr6:
52852206-52852155
52
GSTA4_HUMAN
30-47
18
8
A:30-47
B:30-47
C:30-47
D:30-47
E:30-47
F:30-47
G:30-47
H:30-47
18
18
18
18
18
18
18
18
1.5
ENST00000370963
5
ENSE00002153494
chr6:
52850381-52850249
133
GSTA4_HUMAN
47-91
45
8
A:47-91
B:47-91
C:47-91
D:47-91
E:47-91
F:47-91
G:47-91
H:47-91
45
45
45
45
45
45
45
45
1.6
ENST00000370963
6
ENSE00002191487
chr6:
52849403-52849262
142
GSTA4_HUMAN
91-138
48
8
A:91-138
B:91-138
C:91-138
D:91-138
E:91-138
F:91-138
G:91-138
H:91-138
48
48
48
48
48
48
48
48
1.7
ENST00000370963
7
ENSE00002156856
chr6:
52847503-52847372
132
GSTA4_HUMAN
139-182
44
8
A:139-182
B:139-182
C:139-182
D:139-182
E:139-182
F:139-182
G:139-182
H:139-182
44
44
44
44
44
44
44
44
1.8c
ENST00000370963
8c
ENSE00002153108
chr6:
52843390-52842751
640
GSTA4_HUMAN
183-222
40
8
A:183-220
B:183-220
C:183-220
D:183-220
E:183-220
F:183-220
G:183-220
H:183-220
38
38
38
38
38
38
38
38
[
close EXON info
]
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1gula1 (A:81-220)
1b: SCOP_d1gulb1 (B:81-220)
1c: SCOP_d1gulc1 (C:81-220)
1d: SCOP_d1guld1 (D:81-220)
1e: SCOP_d1gule1 (E:81-220)
1f: SCOP_d1gulf1 (F:81-220)
1g: SCOP_d1gulg1 (G:81-220)
1h: SCOP_d1gulh1 (H:81-220)
2a: SCOP_d1gula2 (A:4-80)
2b: SCOP_d1gulb2 (B:4-80)
2c: SCOP_d1gulc2 (C:4-80)
2d: SCOP_d1guld2 (D:4-80)
2e: SCOP_d1gule2 (E:4-80)
2f: SCOP_d1gulf2 (F:4-80)
2g: SCOP_d1gulg2 (G:4-80)
2h: SCOP_d1gulh2 (H:4-80)
View:
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)
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)
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(
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
1a
d1gula1
A:81-220
1b
d1gulb1
B:81-220
1c
d1gulc1
C:81-220
1d
d1guld1
D:81-220
1e
d1gule1
E:81-220
1f
d1gulf1
F:81-220
1g
d1gulg1
G:81-220
1h
d1gulh1
H:81-220
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
2a
d1gula2
A:4-80
2b
d1gulb2
B:4-80
2c
d1gulc2
C:4-80
2d
d1guld2
D:4-80
2e
d1gule2
E:4-80
2f
d1gulf2
F:4-80
2g
d1gulg2
G:4-80
2h
d1gulh2
H:4-80
[
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]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1gulA01 (A:4-81,A:191-209)
1b: CATH_1gulB01 (B:4-81,B:191-209)
1c: CATH_1gulC01 (C:4-81,C:191-209)
1d: CATH_1gulD01 (D:4-81,D:191-209)
1e: CATH_1gulE01 (E:4-81,E:191-209)
1f: CATH_1gulF01 (F:4-81,F:191-209)
1g: CATH_1gulG01 (G:4-81,G:191-209)
1h: CATH_1gulH01 (H:4-81,H:191-209)
2a: CATH_1gulA02 (A:82-190)
2b: CATH_1gulB02 (B:82-190)
2c: CATH_1gulC02 (C:82-190)
2d: CATH_1gulD02 (D:82-190)
2e: CATH_1gulE02 (E:82-190)
2f: CATH_1gulF02 (F:82-190)
2g: CATH_1gulG02 (G:82-190)
2h: CATH_1gulH02 (H:82-190)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1gulA01
A:4-81,A:191-209
1b
1gulB01
B:4-81,B:191-209
1c
1gulC01
C:4-81,C:191-209
1d
1gulD01
D:4-81,D:191-209
1e
1gulE01
E:4-81,E:191-209
1f
1gulF01
F:4-81,F:191-209
1g
1gulG01
G:4-81,G:191-209
1h
1gulH01
H:4-81,H:191-209
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
1gulA02
A:82-190
2b
1gulB02
B:82-190
2c
1gulC02
C:82-190
2d
1gulD02
D:82-190
2e
1gulE02
E:82-190
2f
1gulF02
F:82-190
2g
1gulG02
G:82-190
2h
1gulH02
H:82-190
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (302 KB)
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Biol.Unit 1 (77 KB)
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