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1GTZ
Asym. Unit
Info
Asym.Unit (617 KB)
Biol.Unit 1 (609 KB)
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(1)
Title
:
STRUCTURE OF STREPTOMYCES COELICOLOR TYPE II DEHYDROQUINASE R23A MUTANT IN COMPLEX WITH DEHYDROSHIKIMATE
Authors
:
A. W. Roszak, T. Krell, D. A. Robinson, I. S. Hunter, J. R. Coggins, A. J. Lapthorn
Date
:
22 Jan 02 (Deposition) - 27 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Lyase, Type Ii Dehydroquinase, Shikimate Pathway, Dodecameric Quaternary Structure, Tetrahedral Symmetry Aromatic Amino Acid Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Roszak, D. A. Robinson, T. Krell, I. S. Hunter, M. Fredrickson, C. Abell, J. R. Coggins, A. J. Lapthorn
The Structure And Mechanism Of The Type Ii Dehydroquinase From Streptomyces Coelicolor
Structure V. 10 493 2002
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: 3-DEHYDROSHIKIMATE (DHKa)
1b: 3-DEHYDROSHIKIMATE (DHKb)
1c: 3-DEHYDROSHIKIMATE (DHKc)
1d: 3-DEHYDROSHIKIMATE (DHKd)
1e: 3-DEHYDROSHIKIMATE (DHKe)
1f: 3-DEHYDROSHIKIMATE (DHKf)
1g: 3-DEHYDROSHIKIMATE (DHKg)
1h: 3-DEHYDROSHIKIMATE (DHKh)
1i: 3-DEHYDROSHIKIMATE (DHKi)
1j: 3-DEHYDROSHIKIMATE (DHKj)
1k: 3-DEHYDROSHIKIMATE (DHKk)
1l: 3-DEHYDROSHIKIMATE (DHKl)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DHK
12
Ligand/Ion
3-DEHYDROSHIKIMATE
2
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:28 , ASN A:79 , ALA A:81 , ALA A:82 , HIS A:85 , HIS A:106 , ILE A:107 , SER A:108 , ARG A:117 , HOH A:2013 , ASP B:92
BINDING SITE FOR RESIDUE DHK A1162
02
AC2
SOFTWARE
GLU A:59 , THR A:86 , SER A:87 , GLU B:59 , THR B:86 , SER B:87 , GLU C:59 , THR C:86 , SER C:87
BINDING SITE FOR RESIDUE TRS A1152
03
AC3
SOFTWARE
TYR B:28 , ASN B:79 , ALA B:81 , ALA B:82 , HIS B:85 , HIS B:106 , ILE B:107 , SER B:108 , ARG B:117 , HOH B:2116 , ASP C:92
BINDING SITE FOR RESIDUE DHK B1162
04
AC4
SOFTWARE
ASP A:92 , TYR C:28 , ASN C:79 , ALA C:81 , ALA C:82 , HIS C:85 , ILE C:107 , SER C:108 , ARG C:117 , HOH C:2093
BINDING SITE FOR RESIDUE DHK C1162
05
AC5
SOFTWARE
TYR D:28 , ASN D:79 , ALA D:81 , ALA D:82 , HIS D:85 , ILE D:107 , SER D:108 , ARG D:117 , HOH D:2014 , ASP E:92
BINDING SITE FOR RESIDUE DHK D1162
06
AC6
SOFTWARE
GLU D:59 , THR D:86 , SER D:87 , GLU E:59 , THR E:86 , SER E:87 , GLU F:59 , THR F:86 , SER F:87
BINDING SITE FOR RESIDUE TRS D1152
07
AC7
SOFTWARE
TYR E:28 , ASN E:79 , ALA E:81 , ALA E:82 , HIS E:85 , HIS E:106 , ILE E:107 , SER E:108 , ARG E:117 , HOH E:2163 , ASP F:92
BINDING SITE FOR RESIDUE DHK E1162
08
AC8
SOFTWARE
ASP D:92 , TYR F:28 , ASN F:79 , ALA F:81 , ALA F:82 , HIS F:85 , HIS F:106 , ILE F:107 , SER F:108 , ARG F:117 , HOH F:2009
BINDING SITE FOR RESIDUE DHK F1162
09
AC9
SOFTWARE
TYR G:28 , ASN G:79 , ALA G:81 , ALA G:82 , HIS G:85 , ILE G:107 , SER G:108 , ARG G:117 , HOH G:2015 , ASP H:92
BINDING SITE FOR RESIDUE DHK G1162
10
BC1
SOFTWARE
GLU G:59 , THR G:86 , SER G:87 , GLU H:59 , THR H:86 , SER H:87 , GLU I:59 , THR I:86 , SER I:87
BINDING SITE FOR RESIDUE TRS G1153
11
BC2
SOFTWARE
TYR H:28 , ASN H:79 , ALA H:81 , ALA H:82 , HIS H:85 , HIS H:106 , ILE H:107 , SER H:108 , ARG H:117 , HOH H:2012 , ASP I:92
BINDING SITE FOR RESIDUE DHK H1162
12
BC3
SOFTWARE
ASP G:92 , TYR I:28 , ASN I:79 , ALA I:81 , ALA I:82 , HIS I:85 , HIS I:106 , ILE I:107 , SER I:108 , ARG I:117 , HOH I:2012
BINDING SITE FOR RESIDUE DHK I1162
13
BC4
SOFTWARE
TYR J:28 , ASN J:79 , ALA J:81 , ALA J:82 , HIS J:85 , HIS J:106 , ILE J:107 , SER J:108 , ARG J:117 , HOH J:2009 , ASP K:92
BINDING SITE FOR RESIDUE DHK J1162
14
BC5
SOFTWARE
GLU J:59 , THR J:86 , SER J:87 , GLU K:59 , THR K:86 , SER K:87 , GLU L:59 , THR L:86 , SER L:87
BINDING SITE FOR RESIDUE TRS J1152
15
BC6
SOFTWARE
TYR K:28 , ASN K:79 , ALA K:81 , ALA K:82 , HIS K:85 , HIS K:106 , ILE K:107 , SER K:108 , ARG K:117 , HOH K:2008 , ASP L:92
BINDING SITE FOR RESIDUE DHK K1162
16
BC7
SOFTWARE
ASP J:92 , TYR L:28 , ASN L:79 , ALA L:81 , ALA L:82 , HIS L:85 , ILE L:107 , SER L:108 , ARG L:117 , HOH L:2004
BINDING SITE FOR RESIDUE DHK L1162
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: DEHYDROQUINASE_II (A:12-29,B:12-29,C:12-29,D:12-29,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDROQUINASE_II
PS01029
Dehydroquinase class II signature.
AROQ_STRCO
13-30
12
A:12-29
B:12-29
C:12-29
D:12-29
E:12-29
F:12-29
G:12-29
H:12-29
I:12-29
J:12-29
K:12-29
L:12-29
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1gtza_ (A:)
1b: SCOP_d1gtzb_ (B:)
1c: SCOP_d1gtzk_ (K:)
1d: SCOP_d1gtzl_ (L:)
1e: SCOP_d1gtzc_ (C:)
1f: SCOP_d1gtzd_ (D:)
1g: SCOP_d1gtze_ (E:)
1h: SCOP_d1gtzf_ (F:)
1i: SCOP_d1gtzg_ (G:)
1j: SCOP_d1gtzh_ (H:)
1k: SCOP_d1gtzi_ (I:)
1l: SCOP_d1gtzj_ (J:)
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)
(
)
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Type II 3-dehydroquinate dehydratase
(40)
Family
:
Type II 3-dehydroquinate dehydratase
(38)
Protein domain
:
Type II 3-dehydroquinate dehydratase
(20)
Streptomyces coelicolor [TaxId: 1902]
(4)
1a
d1gtza_
A:
1b
d1gtzb_
B:
1c
d1gtzk_
K:
1d
d1gtzl_
L:
1e
d1gtzc_
C:
1f
d1gtzd_
D:
1g
d1gtze_
E:
1h
d1gtzf_
F:
1i
d1gtzg_
G:
1j
d1gtzh_
H:
1k
d1gtzi_
I:
1l
d1gtzj_
J:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1gtzA00 (A:2-150)
1b: CATH_1gtzB00 (B:2-150)
1c: CATH_1gtzK00 (K:2-150)
1d: CATH_1gtzL00 (L:2-150)
1e: CATH_1gtzC00 (C:2-150)
1f: CATH_1gtzD00 (D:2-150)
1g: CATH_1gtzE00 (E:2-150)
1h: CATH_1gtzF00 (F:2-150)
1i: CATH_1gtzG00 (G:2-150)
1j: CATH_1gtzH00 (H:2-150)
1k: CATH_1gtzI00 (I:2-150)
1l: CATH_1gtzJ00 (J:2-150)
View:
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.9100, no name defined]
(22)
Streptomyces coelicolor. Organism_taxid: 1902.
(7)
1a
1gtzA00
A:2-150
1b
1gtzB00
B:2-150
1c
1gtzK00
K:2-150
1d
1gtzL00
L:2-150
1e
1gtzC00
C:2-150
1f
1gtzD00
D:2-150
1g
1gtzE00
E:2-150
1h
1gtzF00
F:2-150
1i
1gtzG00
G:2-150
1j
1gtzH00
H:2-150
1k
1gtzI00
I:2-150
1l
1gtzJ00
J:2-150
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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