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1GT7
Biol. Unit 5
Info
Asym.Unit (938 KB)
Biol.Unit 1 (380 KB)
Biol.Unit 2 (379 KB)
Biol.Unit 3 (380 KB)
Biol.Unit 4 (380 KB)
Biol.Unit 5 (379 KB)
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Title
:
L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI
Authors
:
M. Kroemer, G. E. Schulz
Date
:
14 Jan 02 (Deposition) - 03 May 02 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D (2x)
Biol. Unit 2: E,F,G,H,Q,R,S,T (1x)
Biol. Unit 3: I,J,K,L,M,N,O,P (1x)
Biol. Unit 4: I,J,K,L,M,N,O,P (1x)
Biol. Unit 5: E,F,G,H,Q,R,S,T (1x)
Keywords
:
Lyase, Aldolase (Lyase), Class Ii, Zinc Enzyme, Bacterial L- Rhamnose Metabolism, Cleavage Of L-Rhamnulose-1-Phosphate To Dihydroxyacetonephosphate And L-Lactaldehyde
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kroemer, G. E. Schulz
The Structure Of L-Rhamnulose-1-Phosphate Aldolase (Class Ii) Solved By Low-Resolution Sir Phasing And 20-Fold Ncs Averaging
Acta Crystallogr. , Sect. D V. 58 824 2002
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHa)
1b: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHb)
1c: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHc)
1d: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHd)
1e: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHe)
1f: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHf)
1g: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHg)
1h: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHh)
1i: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHi)
1j: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHj)
1k: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHk)
1l: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHl)
1m: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHm)
1n: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHn)
1o: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHo)
1p: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHp)
1q: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHq)
1r: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHr)
1s: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHs)
1t: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHt)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
2q: ZINC ION (ZNq)
2r: ZINC ION (ZNr)
2s: ZINC ION (ZNs)
2t: ZINC ION (ZNt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PGH
4
Ligand/Ion
PHOSPHOGLYCOLOHYDROXAMIC ACID
2
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC2 (SOFTWARE)
15: EC3 (SOFTWARE)
16: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
HIS E:141 , HIS E:143 , HIS E:212 , PGH E:300 , HOH E:2179
BINDING SITE FOR RESIDUE ZN E 275
02
AC6
SOFTWARE
HIS F:141 , HIS F:143 , HIS F:212 , PGH F:300 , HOH F:2174
BINDING SITE FOR RESIDUE ZN F 275
03
AC7
SOFTWARE
HIS G:141 , HIS G:143 , HIS G:212 , PGH G:300 , HOH G:2176
BINDING SITE FOR RESIDUE ZN G 275
04
AC8
SOFTWARE
HIS H:141 , HIS H:143 , HIS H:212 , PGH H:300 , HOH H:2171
BINDING SITE FOR RESIDUE ZN H 275
05
BC8
SOFTWARE
HIS Q:141 , HIS Q:143 , HIS Q:212 , PGH Q:300 , HOH Q:2176
BINDING SITE FOR RESIDUE ZN Q 275
06
BC9
SOFTWARE
HIS R:141 , HIS R:143 , HIS R:212 , PGH R:300 , HOH R:2172
BINDING SITE FOR RESIDUE ZN R 275
07
CC1
SOFTWARE
HIS S:141 , HIS S:143 , HIS S:212 , PGH S:300 , HOH S:2171
BINDING SITE FOR RESIDUE ZN S 275
08
CC2
SOFTWARE
HIS T:141 , HIS T:143 , HIS T:212 , PGH T:300 , HOH T:2170
BINDING SITE FOR RESIDUE ZN T 275
09
CC7
SOFTWARE
ASN E:29 , GLY E:30 , GLY E:31 , ASN E:32 , SER E:75 , GLY E:76 , THR E:115 , SER E:116 , GLU E:117 , HIS E:141 , HIS E:143 , HIS E:212 , ZN E:275 , HOH E:2081 , HOH E:2179
BINDING SITE FOR RESIDUE PGH E 300
10
CC8
SOFTWARE
ASN F:29 , GLY F:30 , GLY F:31 , ASN F:32 , SER F:75 , GLY F:76 , THR F:115 , SER F:116 , GLU F:117 , HIS F:141 , HIS F:143 , HIS F:212 , ZN F:275 , HOH F:2074 , HOH F:2174
BINDING SITE FOR RESIDUE PGH F 300
11
CC9
SOFTWARE
ASN G:29 , GLY G:30 , GLY G:31 , ASN G:32 , SER G:75 , GLY G:76 , THR G:115 , SER G:116 , GLU G:117 , HIS G:141 , HIS G:143 , HIS G:212 , ZN G:275 , HOH G:2077 , HOH G:2176
BINDING SITE FOR RESIDUE PGH G 300
12
DC1
SOFTWARE
ASN H:29 , GLY H:30 , GLY H:31 , ASN H:32 , SER H:75 , GLY H:76 , THR H:115 , SER H:116 , GLU H:117 , HIS H:141 , HIS H:143 , HIS H:212 , ZN H:275 , HOH H:2073 , HOH H:2171
BINDING SITE FOR RESIDUE PGH H 300
13
EC1
SOFTWARE
ASN Q:29 , GLY Q:30 , GLY Q:31 , ASN Q:32 , SER Q:75 , GLY Q:76 , THR Q:115 , SER Q:116 , GLU Q:117 , HIS Q:141 , HIS Q:143 , HIS Q:212 , ZN Q:275 , HOH Q:2081 , HOH Q:2176
BINDING SITE FOR RESIDUE PGH Q 300
14
EC2
SOFTWARE
ASN R:29 , GLY R:30 , GLY R:31 , ASN R:32 , SER R:75 , GLY R:76 , THR R:115 , SER R:116 , GLU R:117 , HIS R:141 , HIS R:143 , HIS R:212 , ZN R:275 , HOH R:2075 , HOH R:2172
BINDING SITE FOR RESIDUE PGH R 300
15
EC3
SOFTWARE
ASN S:29 , GLY S:30 , GLY S:31 , ASN S:32 , SER S:75 , GLY S:76 , THR S:115 , SER S:116 , GLU S:117 , HIS S:141 , HIS S:143 , HIS S:212 , ZN S:275 , HOH S:2076 , HOH S:2171
BINDING SITE FOR RESIDUE PGH S 300
16
EC4
SOFTWARE
ASN T:29 , GLY T:31 , ASN T:32 , SER T:75 , GLY T:76 , THR T:115 , SER T:116 , GLU T:117 , HIS T:141 , HIS T:143 , HIS T:212 , ZN T:275 , HOH T:2071 , HOH T:2170
BINDING SITE FOR RESIDUE PGH T 300
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d1gt7a_ (A:)
1b: SCOP_d1gt7b_ (B:)
1c: SCOP_d1gt7c_ (C:)
1d: SCOP_d1gt7d_ (D:)
1e: SCOP_d1gt7e_ (E:)
1f: SCOP_d1gt7f_ (F:)
1g: SCOP_d1gt7g_ (G:)
1h: SCOP_d1gt7h_ (H:)
1i: SCOP_d1gt7i_ (I:)
1j: SCOP_d1gt7j_ (J:)
1k: SCOP_d1gt7k_ (K:)
1l: SCOP_d1gt7l_ (L:)
1m: SCOP_d1gt7m_ (M:)
1n: SCOP_d1gt7n_ (N:)
1o: SCOP_d1gt7o_ (O:)
1p: SCOP_d1gt7p_ (P:)
1q: SCOP_d1gt7q_ (Q:)
1r: SCOP_d1gt7r_ (R:)
1s: SCOP_d1gt7s_ (S:)
1t: SCOP_d1gt7t_ (T:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
AraD/HMP-PK domain-like
(40)
Superfamily
:
AraD/HMP-PK domain-like
(40)
Family
:
AraD-like aldolase/epimerase
(35)
Protein domain
:
L-rhamnulose-1-phosphate aldolase
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1gt7a_
A:
1b
d1gt7b_
B:
1c
d1gt7c_
C:
1d
d1gt7d_
D:
1e
d1gt7e_
E:
1f
d1gt7f_
F:
1g
d1gt7g_
G:
1h
d1gt7h_
H:
1i
d1gt7i_
I:
1j
d1gt7j_
J:
1k
d1gt7k_
K:
1l
d1gt7l_
L:
1m
d1gt7m_
M:
1n
d1gt7n_
N:
1o
d1gt7o_
O:
1p
d1gt7p_
P:
1q
d1gt7q_
Q:
1r
d1gt7r_
R:
1s
d1gt7s_
S:
1t
d1gt7t_
T:
[
close SCOP info
]
CATH Domains
(1, 20)
Info
all CATH domains
1a: CATH_1gt7A00 (A:1-274)
1b: CATH_1gt7B00 (B:1-274)
1c: CATH_1gt7C00 (C:1-274)
1d: CATH_1gt7D00 (D:1-274)
1e: CATH_1gt7E00 (E:1-274)
1f: CATH_1gt7F00 (F:1-274)
1g: CATH_1gt7G00 (G:1-274)
1h: CATH_1gt7H00 (H:1-274)
1i: CATH_1gt7I00 (I:1-274)
1j: CATH_1gt7J00 (J:1-274)
1k: CATH_1gt7K00 (K:1-274)
1l: CATH_1gt7L00 (L:1-274)
1m: CATH_1gt7M00 (M:1-274)
1n: CATH_1gt7N00 (N:1-274)
1o: CATH_1gt7O00 (O:1-274)
1p: CATH_1gt7P00 (P:1-274)
1q: CATH_1gt7Q00 (Q:1-274)
1r: CATH_1gt7R00 (R:1-274)
1s: CATH_1gt7S00 (S:1-274)
1t: CATH_1gt7T00 (T:1-274)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
L-fuculose-1-phosphate Aldolase
(38)
Homologous Superfamily
:
L-fuculose-1-phosphate Aldolase
(38)
Escherichia coli. Organism_taxid: 562.
(28)
1a
1gt7A00
A:1-274
1b
1gt7B00
B:1-274
1c
1gt7C00
C:1-274
1d
1gt7D00
D:1-274
1e
1gt7E00
E:1-274
1f
1gt7F00
F:1-274
1g
1gt7G00
G:1-274
1h
1gt7H00
H:1-274
1i
1gt7I00
I:1-274
1j
1gt7J00
J:1-274
1k
1gt7K00
K:1-274
1l
1gt7L00
L:1-274
1m
1gt7M00
M:1-274
1n
1gt7N00
N:1-274
1o
1gt7O00
O:1-274
1p
1gt7P00
P:1-274
1q
1gt7Q00
Q:1-274
1r
1gt7R00
R:1-274
1s
1gt7S00
S:1-274
1t
1gt7T00
T:1-274
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (938 KB)
Header - Asym.Unit
Biol.Unit 1 (380 KB)
Header - Biol.Unit 1
Biol.Unit 2 (379 KB)
Header - Biol.Unit 2
Biol.Unit 3 (380 KB)
Header - Biol.Unit 3
Biol.Unit 4 (380 KB)
Header - Biol.Unit 4
Biol.Unit 5 (379 KB)
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