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1GS9
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
APOLIPOPROTEIN E4, 22K DOMAIN
Authors
:
J. R. Verderame, K. Kantardjieff, B. Segelke, K. Weisgraber, B. Rupp
Date
:
02 Jan 02 (Deposition) - 11 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipid Transport, Heparin-Binding, Plasma, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Verderame, K. Kantardjieff, B. Segelke, K. Weisgraber, B. Rupp
Crystal Structure Of The 22K Domain Of Human Apolipoprotein E4
To Be Published
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close entry info
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(21, 21)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_042734 (R25C, chain A, )
02: VAR_000647 (L28P, chain A, )
03: VAR_000648 (T42A, chain A, )
04: VAR_014114 (Q46H, chain A, )
05: VAR_000649 (Q81K, chain A, )
06: VAR_000650 (P84R, chain A, )
07: VAR_000651 (A99T, chain A, )
08: VAR_016789 (A106V, chain A, )
09: VAR_000652 (R112R, chain A, )
10: VAR_000653 (G127D, chain A, )
11: VAR_000655 (R134Q, chain A, )
12: VAR_000657 (R136C, chain A, )
13: VAR_000656 (R136S, chain A, )
14: VAR_000658 (R142C, chain A, )
15: VAR_000659 (R145C, chain A, )
16: VAR_000660 (R145H, chain A, )
17: VAR_042735 (R145P, chain A, )
18: VAR_000662 (K146E, chain A, )
19: VAR_000661 (K146Q, chain A, )
20: VAR_000663 (A152P, chain A, )
21: VAR_000664 (R158C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_042734
R
43
C
APOE_HUMAN
Disease (LPG)
---
A
R
25
C
02
UniProt
VAR_000647
L
46
P
APOE_HUMAN
Polymorphism
769452
A
L
28
P
03
UniProt
VAR_000648
T
60
A
APOE_HUMAN
Polymorphism
28931576
A
T
42
A
04
UniProt
VAR_014114
Q
64
H
APOE_HUMAN
Polymorphism
---
A
Q
46
H
05
UniProt
VAR_000649
Q
99
K
APOE_HUMAN
Unclassified
---
A
Q
81
K
06
UniProt
VAR_000650
P
102
R
APOE_HUMAN
Polymorphism
28931578
A
P
84
R
07
UniProt
VAR_000651
A
117
T
APOE_HUMAN
Polymorphism
28931577
A
A
99
T
08
UniProt
VAR_016789
A
124
V
APOE_HUMAN
Unclassified
---
A
A
106
V
09
UniProt
VAR_000652
C
130
R
APOE_HUMAN
Disease (HLPP3)
429358
A
R
112
R
10
UniProt
VAR_000653
G
145
D
APOE_HUMAN
Unclassified
---
A
G
127
D
11
UniProt
VAR_000655
R
152
Q
APOE_HUMAN
Polymorphism
28931578
A
R
134
Q
12
UniProt
VAR_000657
R
154
C
APOE_HUMAN
Disease (HLPP3)
---
A
R
136
C
13
UniProt
VAR_000656
R
154
S
APOE_HUMAN
Disease (HLPP3)
---
A
R
136
S
14
UniProt
VAR_000658
R
160
C
APOE_HUMAN
Disease (HLPP3)
---
A
R
142
C
15
UniProt
VAR_000659
R
163
C
APOE_HUMAN
Disease (HLPP3)
769455
A
R
145
C
16
UniProt
VAR_000660
R
163
H
APOE_HUMAN
Unclassified
---
A
R
145
H
17
UniProt
VAR_042735
R
163
P
APOE_HUMAN
Disease (LPG)
---
A
R
145
P
18
UniProt
VAR_000662
K
164
E
APOE_HUMAN
Disease (HLPP3)
---
A
K
146
E
19
UniProt
VAR_000661
K
164
Q
APOE_HUMAN
Disease (HLPP3)
---
A
K
146
Q
20
UniProt
VAR_000663
A
170
P
APOE_HUMAN
Unclassified
---
A
A
152
P
21
UniProt
VAR_000664
R
176
C
APOE_HUMAN
Disease (HLPP3)
7412
A
R
158
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:22-61)
Exon 1.4d (A:61-165)
View:
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All Exon Boundaries
1: Boundary 1.2c/1.3
2: Boundary 1.3/1.4d
3: Boundary 1.4d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000252486
1a
ENSE00001815473
chr19:
45408956-45409098
143
APOE_HUMAN
-
0
0
-
-
1.2c
ENST00000252486
2c
ENSE00001678742
chr19:
45409859-45409924
66
APOE_HUMAN
1-15
15
0
-
-
1.3
ENST00000252486
3
ENSE00000893952
chr19:
45411017-45411209
193
APOE_HUMAN
15-79
65
1
A:22-61
40
1.4d
ENST00000252486
4d
ENSE00000893954
chr19:
45411790-45412650
861
APOE_HUMAN
79-317
239
1
A:61-165
105
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gs9a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Apolipoprotein
(12)
Family
:
Apolipoprotein
(12)
Protein domain
:
Apolipoprotein E
(12)
Human (Homo sapiens), E4 [TaxId: 9606]
(3)
1a
d1gs9a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gs9A00 (A:22-165)
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Classes
(
)
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Architectures
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
Apolipoprotein (APOA1 / APOA4 / APOE FAMILY)
(15)
Human (Homo sapiens)
(12)
1a
1gs9A00
A:22-165
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (34 KB)
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