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1GQP
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
APC10/DOC1 SUBUNIT OF S. CEREVISIAE
Authors
:
S. W. N. Au, X. Leng, J. W. A. D. E. Harper, D. Barford
Date
:
28 Nov 01 (Deposition) - 15 Mar 02 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Cycle, Apc10/Doc1, Apc/Cyclosome, Ubiquitination, E3 Ubiquitin Ligase, Beta Sandwich, Jelly Roll
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. W. N. Au, X. Leng, J. W. A. D. E. Harper, D. Barford
Implications For The Ubiquitination Reaction Of The Anaphase-Promoting Complex From The Crystal Structure Of Th Doc1/Apc10 Subunit.
J. Mol. Biol. V. 316 955 2002
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
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No.
Name
Count
Type
Full Name
1
BR
6
Ligand/Ion
BROMIDE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:243
binding site for residue BR A 301
2
AC2
SOFTWARE
GLY A:131 , LYS A:187
binding site for residue BR A 302
3
AC3
SOFTWARE
HIS A:192 , GLN A:229
binding site for residue BR A 303
4
AC4
SOFTWARE
GLY B:131 , PRO B:133 , LYS B:187 , MET B:202
binding site for residue BR B 301
5
AC5
SOFTWARE
ASN B:82 , GLN B:89
binding site for residue BR B 302
6
AC6
SOFTWARE
GLN B:229
binding site for residue BR B 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DOC (A:93-257,B:93-257)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DOC
PS51284
DOC domain profile.
APC10_YEAST
60-246
2
A:93-257
B:93-257
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:63-257 (gaps) | B:63-257 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL240W
1
YGL240W.1
VII:48613-49365
753
APC10_YEAST
1-250
250
2
A:63-257 (gaps)
B:63-257 (gaps)
195
195
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gqpa_ (A:)
1b: SCOP_d1gqpb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
APC10-like
(4)
Protein domain
:
APC10/DOC1 subunit of the anaphase-promoting complex
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1gqpa_
A:
1b
d1gqpb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gqpB00 (B:63-256)
1b: CATH_1gqpA00 (A:63-256)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Baker's yeast (Saccharomyces cerevisiae)
(6)
1a
1gqpB00
B:63-256
1b
1gqpA00
A:63-256
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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