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1GQK
Asym. Unit
Info
Asym.Unit (261 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
STRUCTURE OF PSEUDOMONAS CELLULOSA ALPHA-D-GLUCURONIDASE COMPLEXED WITH GLUCURONIC ACID
Authors
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
Date
:
26 Nov 01 (Deposition) - 26 Sep 02 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Glucuronidase, (Alpha-Beta)8 Barrel, Glycoside Hydrolase, Glucuronic Acid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
The Structural Basis For Catalysis And Specificity Of The Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A
Structure V. 10 547 2002
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
1b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
2e: COBALT (II) ION (COe)
2f: COBALT (II) ION (COf)
2g: COBALT (II) ION (COg)
2h: COBALT (II) ION (COh)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
2
CO
8
Ligand/Ion
COBALT (II) ION
3
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:160 , GLU A:168 , ARG A:169 , ASN A:211 , LYS A:288 , GLU A:292 , ARG A:325 , PHE A:327 , LYS A:360 , ASP A:365 , GLU A:393 , TYR A:394 , HOH A:2643
BINDING SITE FOR RESIDUE BDP A 1713
02
AC2
SOFTWARE
TRP B:160 , GLU B:168 , ARG B:169 , ASN B:211 , LYS B:288 , ARG B:325 , PHE B:327 , LYS B:360 , ASP B:365 , GLU B:393 , HOH B:2625 , HOH B:2626
BINDING SITE FOR RESIDUE BDP B 1713
03
AC3
SOFTWARE
ALA A:625 , THR A:629
BINDING SITE FOR RESIDUE CO A 1720
04
AC4
SOFTWARE
GLY A:7 , ASN A:452 , PRO A:457 , GLN A:460 , HOH A:2412 , HOH A:2572
BINDING SITE FOR RESIDUE CO A 1721
05
AC5
SOFTWARE
ASN A:607 , TRP A:609 , ARG A:673
BINDING SITE FOR RESIDUE CO A 1722
06
AC6
SOFTWARE
ASN A:162 , ASN A:164 , TRP A:702 , HOH A:2650
BINDING SITE FOR RESIDUE CO A 1723
07
AC7
SOFTWARE
ALA B:625 , THR B:629
BINDING SITE FOR RESIDUE CO B 1720
08
AC8
SOFTWARE
GLY B:7 , ASN B:452 , GLN B:460 , HOH B:2402 , HOH B:2556
BINDING SITE FOR RESIDUE CO B 1721
09
AC9
SOFTWARE
ASN B:162 , ASN B:164 , TRP B:702 , HOH B:2635
BINDING SITE FOR RESIDUE CO B 1722
10
BC1
SOFTWARE
ASN B:607 , TRP B:609 , ARG B:673
BINDING SITE FOR RESIDUE CO B 1723
11
BC2
SOFTWARE
TYR A:101 , ARG A:133 , SER A:199 , LEU A:200 , TRP A:471 , EDO A:1716 , HOH A:2414
BINDING SITE FOR RESIDUE EDO A 1714
12
BC3
SOFTWARE
ARG A:51 , PRO A:188 , ASP A:192 , HOH A:2189 , HOH A:2644 , HOH A:2645
BINDING SITE FOR RESIDUE EDO A 1715
13
BC4
SOFTWARE
HIS A:130 , ARG A:133 , SER A:148 , ARG A:468 , TRP A:471 , ILE A:475 , EDO A:1714 , HOH A:2416
BINDING SITE FOR RESIDUE EDO A 1716
14
BC5
SOFTWARE
TYR A:8 , ASP A:9 , LEU A:12 , ASP A:192 , ARG A:195 , ILE A:196 , HOH A:2191 , HOH A:2646
BINDING SITE FOR RESIDUE EDO A 1717
15
BC6
SOFTWARE
ASP A:178 , TYR A:185 , GLN B:644 , LEU B:648 , HOH B:2359
BINDING SITE FOR RESIDUE EDO A 1718
16
BC7
SOFTWARE
ASP A:631 , LYS A:646 , GLN A:650 , HOH A:2648
BINDING SITE FOR RESIDUE EDO A 1719
17
BC8
SOFTWARE
TYR B:101 , ARG B:133 , SER B:199 , LEU B:200 , TRP B:471 , EDO B:1719 , HOH B:2185
BINDING SITE FOR RESIDUE EDO B 1714
18
BC9
SOFTWARE
ARG B:51 , ASP B:192 , HOH B:2181 , HOH B:2627 , HOH B:2628 , HOH B:2630
BINDING SITE FOR RESIDUE EDO B 1715
19
CC1
SOFTWARE
ASN B:559 , HIS B:594 , HIS B:595 , HOH B:2631
BINDING SITE FOR RESIDUE EDO B 1716
20
CC2
SOFTWARE
TYR B:8 , ASP B:9 , LEU B:12 , ASP B:192 , ARG B:195 , ILE B:196 , HOH B:2018 , HOH B:2632
BINDING SITE FOR RESIDUE EDO B 1717
21
CC3
SOFTWARE
GLY A:349 , ALA A:352 , GLY B:420 , GLU B:421 , HOH B:2633
BINDING SITE FOR RESIDUE EDO B 1718
22
CC4
SOFTWARE
HIS B:130 , ARG B:133 , SER B:148 , ARG B:468 , TRP B:471 , ILE B:475 , EDO B:1714 , HOH B:2406
BINDING SITE FOR RESIDUE EDO B 1719
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1gqka2 (A:5-151)
1b: SCOP_d1gqkb2 (B:5-151)
2a: SCOP_d1gqka1 (A:152-712)
2b: SCOP_d1gqkb1 (B:152-712)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
1a
d1gqka2
A:5-151
1b
d1gqkb2
B:5-151
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
2a
d1gqka1
A:152-712
2b
d1gqkb1
B:152-712
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1gqkA01 (A:18-148)
1b: CATH_1gqkB01 (B:18-148)
2a: CATH_1gqkA02 (A:153-472)
2b: CATH_1gqkB02 (B:153-472)
3a: CATH_1gqkA03 (A:476-712)
3b: CATH_1gqkB03 (B:476-712)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Cellvibrio japonicus. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
1a
1gqkA01
A:18-148
1b
1gqkB01
B:18-148
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Cellvibrio japonicus. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
2a
1gqkA02
A:153-472
2b
1gqkB02
B:153-472
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Cellvibrio japonicus. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
3a
1gqkA03
A:476-712
3b
1gqkB03
B:476-712
[
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Pfam Domains
(0, 0)
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