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1GQJ
Asym. Unit
Info
Asym.Unit (265 KB)
Biol.Unit 1 (259 KB)
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(1)
Title
:
STRUCTURE OF PSEUDOMONAS CELLULOSA ALPHA-D-GLUCURONIDASE COMPLEXED WITH XYLOBIOSE
Authors
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
Date
:
26 Nov 01 (Deposition) - 26 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glucuronidase, Structure, (Alpha-Beta)8 Barrel, Glycoside Hydrolase, Xylobiose
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
The Structural Basis For Catalysis And Specificity Of The Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A
Structure V. 10 547 2002
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
1f: COBALT (II) ION (COf)
1g: COBALT (II) ION (COg)
1h: COBALT (II) ION (COh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: BETA-D-XYLOPYRANOSE (XYPa)
3b: BETA-D-XYLOPYRANOSE (XYPb)
3c: BETA-D-XYLOPYRANOSE (XYPc)
3d: BETA-D-XYLOPYRANOSE (XYPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
8
Ligand/Ion
COBALT (II) ION
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
XYP
4
Ligand/Ion
BETA-D-XYLOPYRANOSE
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:292 , TYR A:329 , ARG A:336 , ASP A:365 , HIS A:521 , GLN A:525 , HIS A:528 , TRP A:543 , XYP A:1720 , HOH A:2679
BINDING SITE FOR RESIDUE XYP A1719
02
AC2
SOFTWARE
ARG A:169 , GLN A:525 , GLY A:526 , TRP A:702 , HIS A:703 , XYP A:1719 , HOH A:2680 , HOH A:2681 , HOH A:2682
BINDING SITE FOR RESIDUE XYP A1720
03
AC3
SOFTWARE
GLU B:292 , ARG B:336 , ASP B:365 , HIS B:521 , GLN B:525 , HIS B:528 , TRP B:543 , XYP B:1720
BINDING SITE FOR RESIDUE XYP B1719
04
AC4
SOFTWARE
ARG B:169 , GLN B:525 , GLY B:526 , TRP B:543 , TRP B:702 , HIS B:703 , XYP B:1719 , HOH B:2695 , HOH B:2696 , HOH B:2697
BINDING SITE FOR RESIDUE XYP B1720
05
AC5
SOFTWARE
ALA A:625 , THR A:629
BINDING SITE FOR RESIDUE CO A1721
06
AC6
SOFTWARE
GLY A:7 , ASN A:452 , PRO A:457 , HOH A:2613
BINDING SITE FOR RESIDUE CO A1722
07
AC7
SOFTWARE
ASN A:607 , TRP A:609 , ARG A:673
BINDING SITE FOR RESIDUE CO A1723
08
AC8
SOFTWARE
ASN A:162 , ASN A:164 , TRP A:702 , HOH A:2684
BINDING SITE FOR RESIDUE CO A1724
09
AC9
SOFTWARE
ALA B:625 , THR B:629
BINDING SITE FOR RESIDUE CO B1721
10
BC1
SOFTWARE
GLY B:7 , ASN B:452 , PRO B:457 , ARG B:641 , HOH B:2452 , HOH B:2622
BINDING SITE FOR RESIDUE CO B1722
11
BC2
SOFTWARE
ASN B:162 , ASN B:164 , TRP B:702 , HOH B:2699
BINDING SITE FOR RESIDUE CO B1723
12
BC3
SOFTWARE
ASN B:607 , TRP B:609 , ARG B:673
BINDING SITE FOR RESIDUE CO B1724
13
BC4
SOFTWARE
TYR A:101 , HIS A:130 , ARG A:133 , SER A:199 , LEU A:200 , TRP A:471 , HOH A:2220
BINDING SITE FOR RESIDUE EDO A1713
14
BC5
SOFTWARE
ARG A:51 , PRO A:188 , ASP A:192 , HOH A:2213
BINDING SITE FOR RESIDUE EDO A1714
15
BC6
SOFTWARE
HIS A:130 , ARG A:133 , SER A:148 , ARG A:468 , TRP A:471 , ILE A:475 , HOH A:2457
BINDING SITE FOR RESIDUE EDO A1715
16
BC7
SOFTWARE
TYR A:8 , ASP A:9 , LEU A:12 , ASP A:192 , ARG A:195 , ILE A:196 , HOH A:2020 , HOH A:2215
BINDING SITE FOR RESIDUE EDO A1716
17
BC8
SOFTWARE
ASP A:178 , TYR A:185 , GLN B:644 , LEU B:648 , HOH B:2405
BINDING SITE FOR RESIDUE EDO A1717
18
BC9
SOFTWARE
GLN A:627 , ASP A:631 , LYS A:646 , GLN A:650 , HOH A:2678
BINDING SITE FOR RESIDUE EDO A1718
19
CC1
SOFTWARE
TYR B:101 , ARG B:133 , SER B:199 , LEU B:200 , TRP B:471 , HOH B:2453
BINDING SITE FOR RESIDUE EDO B1713
20
CC2
SOFTWARE
ARG B:51 , ASP B:192 , HOH B:2690 , HOH B:2691
BINDING SITE FOR RESIDUE EDO B1714
21
CC3
SOFTWARE
ASN B:559 , HIS B:594 , HIS B:595 , HOH B:2692
BINDING SITE FOR RESIDUE EDO B1715
22
CC4
SOFTWARE
TYR B:8 , ASP B:9 , LEU B:12 , ASP B:192 , ARG B:195 , ILE B:196 , HOH B:2020 , HOH B:2229
BINDING SITE FOR RESIDUE EDO B1716
23
CC5
SOFTWARE
LYS A:350 , ALA A:352 , GLY B:420 , GLU B:421 , HOH B:2693
BINDING SITE FOR RESIDUE EDO B1717
24
CC6
SOFTWARE
HIS B:130 , ARG B:133 , SER B:148 , ARG B:468 , TRP B:471 , ILE B:475 , HOH B:2694
BINDING SITE FOR RESIDUE EDO B1718
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1gqja2 (A:5-151)
1b: SCOP_d1gqjb2 (B:5-151)
2a: SCOP_d1gqja1 (A:152-712)
2b: SCOP_d1gqjb1 (B:152-712)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
1a
d1gqja2
A:5-151
1b
d1gqjb2
B:5-151
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
2a
d1gqja1
A:152-712
2b
d1gqjb1
B:152-712
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1gqjA01 (A:18-148)
1b: CATH_1gqjB01 (B:18-148)
2a: CATH_1gqjA02 (A:153-472)
2b: CATH_1gqjB02 (B:153-472)
3a: CATH_1gqjA03 (A:476-712)
3b: CATH_1gqjB03 (B:476-712)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Pseudomonas cellulosa. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
1a
1gqjA01
A:18-148
1b
1gqjB01
B:18-148
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Pseudomonas cellulosa. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
2a
1gqjA02
A:153-472
2b
1gqjB02
B:153-472
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Pseudomonas cellulosa. Organism_taxid: 155077. Strain: ncimb-10462.
(1)
3a
1gqjA03
A:476-712
3b
1gqjB03
B:476-712
[
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Pfam Domains
(0, 0)
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