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1GQI
Asym. Unit
Info
Asym.Unit (272 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
STRUCTURE OF PSEUDOMONAS CELLULOSA ALPHA-D-GLUCURONIDASE
Authors
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
Date
:
26 Nov 01 (Deposition) - 26 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glucuronidase, (Alpha-Beta)8 Barrel, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Nurizzo, T. Nagy, H. J. Gilbert, G. J. Davies
The Structural Basis For Catalysis And Specificity Of The Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A
Structure V. 10 547 2002
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
1f: COBALT (II) ION (COf)
1g: COBALT (II) ION (COg)
1h: COBALT (II) ION (COh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
8
Ligand/Ion
COBALT (II) ION
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:629
BINDING SITE FOR RESIDUE CO A1719
02
AC2
SOFTWARE
GLY A:7 , ASN A:452 , PRO A:457 , HOH A:2598 , HOH A:2793
BINDING SITE FOR RESIDUE CO A1720
03
AC3
SOFTWARE
ASN A:607 , TRP A:609 , ARG A:673
BINDING SITE FOR RESIDUE CO A1721
04
AC4
SOFTWARE
ASN A:162 , ASN A:164 , TRP A:702 , HOH A:2889 , HOH A:2890
BINDING SITE FOR RESIDUE CO A1722
05
AC5
SOFTWARE
HOH A:2107 , HOH A:2266 , HOH A:2268 , HOH A:2439 , HOH A:2441 , HOH A:2544
BINDING SITE FOR RESIDUE MG A1723
06
AC6
SOFTWARE
THR B:629
BINDING SITE FOR RESIDUE CO B1719
07
AC7
SOFTWARE
GLY B:7 , ASN B:452 , PRO B:457 , HOH B:2591 , HOH B:2786
BINDING SITE FOR RESIDUE CO B1720
08
AC8
SOFTWARE
HOH A:2872 , ASN B:162 , ASN B:164 , TRP B:702 , HOH B:2875 , HOH B:2876
BINDING SITE FOR RESIDUE CO B1721
09
AC9
SOFTWARE
ASN B:607 , TRP B:609 , ARG B:673
BINDING SITE FOR RESIDUE CO B1722
10
BC1
SOFTWARE
HOH B:2111 , HOH B:2265 , HOH B:2266 , HOH B:2440 , HOH B:2441 , HOH B:2537
BINDING SITE FOR RESIDUE MG B1723
11
BC2
SOFTWARE
TYR A:101 , ARG A:133 , SER A:199 , LEU A:200 , TRP A:471 , EDO A:1715 , HOH A:2306
BINDING SITE FOR RESIDUE EDO A1713
12
BC3
SOFTWARE
ARG A:51 , PRO A:188 , ASP A:192 , ARG A:195 , HOH A:2297 , HOH A:2883 , HOH A:2884
BINDING SITE FOR RESIDUE EDO A1714
13
BC4
SOFTWARE
HIS A:130 , ARG A:133 , SER A:148 , ARG A:468 , TRP A:471 , ILE A:475 , EDO A:1713 , HOH A:2602
BINDING SITE FOR RESIDUE EDO A1715
14
BC5
SOFTWARE
TYR A:8 , ASP A:9 , LEU A:12 , ASP A:192 , ARG A:195 , ILE A:196 , HOH A:2017 , HOH A:2027
BINDING SITE FOR RESIDUE EDO A1716
15
BC6
SOFTWARE
ASP A:178 , TYR A:185 , HOH A:2886 , GLY B:455 , GLN B:644 , LEU B:648
BINDING SITE FOR RESIDUE EDO A1717
16
BC7
SOFTWARE
GLN A:627 , ASP A:631 , LYS A:646 , GLN A:650 , HOH A:2887
BINDING SITE FOR RESIDUE EDO A1718
17
BC8
SOFTWARE
TYR B:101 , ARG B:133 , SER B:199 , LEU B:200 , TRP B:471 , HOH B:2311
BINDING SITE FOR RESIDUE EDO B1713
18
BC9
SOFTWARE
ARG B:51 , PRO B:188 , ASP B:192 , ARG B:195 , HOH B:2302 , HOH B:2869 , HOH B:2870
BINDING SITE FOR RESIDUE EDO B1714
19
CC1
SOFTWARE
ASN B:559 , HIS B:594 , HIS B:595 , HOH B:2871
BINDING SITE FOR RESIDUE EDO B1715
20
CC2
SOFTWARE
TYR B:8 , ASP B:9 , LEU B:12 , ASP B:192 , ARG B:195 , ILE B:196 , HOH B:2024 , HOH B:2872
BINDING SITE FOR RESIDUE EDO B1716
21
CC3
SOFTWARE
GLY A:349 , LYS A:350 , PHE A:351 , GLY B:420 , GLU B:421 , HOH B:2873
BINDING SITE FOR RESIDUE EDO B1717
22
CC4
SOFTWARE
HIS B:130 , ARG B:133 , SER B:148 , ARG B:468 , TRP B:471 , ILE B:475 , HOH B:2597
BINDING SITE FOR RESIDUE EDO B1718
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1gqia2 (A:5-151)
1b: SCOP_d1gqib2 (B:5-151)
2a: SCOP_d1gqia1 (A:152-712)
2b: SCOP_d1gqib1 (B:152-712)
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(
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Folds
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
1a
d1gqia2
A:5-151
1b
d1gqib2
B:5-151
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Pseudomonas cellulosa [TaxId: 155077]
(5)
2a
d1gqia1
A:152-712
2b
d1gqib1
B:152-712
[
close SCOP info
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1gqiA01 (A:18-148)
1b: CATH_1gqiB01 (B:18-148)
2a: CATH_1gqiA02 (A:153-472)
2b: CATH_1gqiB02 (B:153-472)
3a: CATH_1gqiA03 (A:476-712)
3b: CATH_1gqiB03 (B:476-712)
View:
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Pseudomonas cellulosa. Organism_taxid: 155077.
(2)
1a
1gqiA01
A:18-148
1b
1gqiB01
B:18-148
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Pseudomonas cellulosa. Organism_taxid: 155077.
(4)
2a
1gqiA02
A:153-472
2b
1gqiB02
B:153-472
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Pseudomonas cellulosa. Organism_taxid: 155077.
(2)
3a
1gqiA03
A:476-712
3b
1gqiB03
B:476-712
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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