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1GQG
Asym. Unit
Info
Asym.Unit (251 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
QUERCETIN 2,3-DIOXYGENASE IN COMPLEX WITH THE INHIBITOR DIETHYLDITHIOCARBAMATE
Authors
:
R. A. Steiner, B. W. Dijkstra
Date
:
23 Nov 01 (Deposition) - 21 Jun 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Oxidoreductase, Dioxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. Steiner, I. M. Kooter, B. W. Dijkstra
Functional Analysis Of The Copper-Dependent Quercetin 2, 3-Dioxygenase. 1. Ligand-Induced Coordination Changes Probed By X-Ray Crystallography: Inhibition, Ordering Effect And Mechanistic Insights
Biochemistry V. 41 7955 2002
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Hetero Components
(4, 29)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: DIETHYLCARBAMODITHIOIC ACID (DCDa)
3b: DIETHYLCARBAMODITHIOIC ACID (DCDb)
3c: DIETHYLCARBAMODITHIOIC ACID (DCDc)
3d: DIETHYLCARBAMODITHIOIC ACID (DCDd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CU
4
Ligand/Ion
COPPER (II) ION
3
DCD
4
Ligand/Ion
DIETHYLCARBAMODITHIOIC ACID
4
NAG
19
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:108 , ASN A:109 , HOH A:2107 , HOH A:2402
BINDING SITE FOR RESIDUE NAG A1353
02
AC2
SOFTWARE
ARG B:108 , ASN B:109 , HOH B:2081 , HOH B:2343
BINDING SITE FOR RESIDUE NAG B1353
03
AC3
SOFTWARE
ASN B:191 , HOH B:2190 , THR D:189
BINDING SITE FOR RESIDUE NAG B1354
04
AC4
SOFTWARE
ASN B:248 , GLY B:272 , SER B:325 , GLY B:326 , HOH B:2344
BINDING SITE FOR RESIDUE NAG B1355
05
AC5
SOFTWARE
ARG B:26 , ASN B:142 , HOH B:2345 , HOH B:2346 , NAG C:1357
BINDING SITE FOR RESIDUE NAG B1356
06
AC6
SOFTWARE
ARG C:108 , ASN C:109 , HOH C:2103 , HOH C:2341
BINDING SITE FOR RESIDUE NAG C1353
07
AC7
SOFTWARE
SER A:182 , ARG D:108 , ASN D:109 , HOH D:2096 , HOH D:2332 , HOH D:2333 , HOH D:2335
BINDING SITE FOR RESIDUE NAG D1353
08
AC8
SOFTWARE
LEU A:139 , ASN D:142 , THR D:144 , HOH D:2339 , HOH D:2341
BINDING SITE FOR RESIDUE NAG D1356
09
AC9
SOFTWARE
ASN D:248 , GLY D:272 , SER D:325 , GLY D:326 , HOH D:2342
BINDING SITE FOR RESIDUE NAG D1357
10
BC1
SOFTWARE
HIS A:66 , HIS A:68 , HIS A:112 , DCD A:1351
BINDING SITE FOR RESIDUE CU A1352
11
BC2
SOFTWARE
HIS B:66 , HIS B:68 , HIS B:112 , DCD B:1351
BINDING SITE FOR RESIDUE CU B1352
12
BC3
SOFTWARE
HIS C:66 , HIS C:68 , HIS C:112 , DCD C:1351
BINDING SITE FOR RESIDUE CU C1352
13
BC4
SOFTWARE
HIS D:66 , HIS D:68 , HIS D:112 , DCD D:1351
BINDING SITE FOR RESIDUE CU D1352
14
BC5
SOFTWARE
TYR A:35 , HIS A:66 , HIS A:68 , GLU A:73 , PHE A:75 , PHE A:114 , ILE A:127 , CU A:1352
BINDING SITE FOR RESIDUE DCD A1351
15
BC6
SOFTWARE
TYR B:35 , HIS B:66 , HIS B:68 , PHE B:75 , PHE B:114 , CU B:1352
BINDING SITE FOR RESIDUE DCD B1351
16
BC7
SOFTWARE
TYR C:35 , MET C:51 , HIS C:66 , HIS C:68 , GLU C:73 , PHE C:75 , PHE C:114 , CU C:1352
BINDING SITE FOR RESIDUE DCD C1351
17
BC8
SOFTWARE
TYR D:35 , HIS D:66 , HIS D:68 , PHE D:75 , PHE D:114 , CU D:1352
BINDING SITE FOR RESIDUE DCD D1351
18
BC9
SOFTWARE
ASN A:142 , ALA A:143 , THR A:144 , VAL A:190 , ASN A:191 , ASN A:248 , GLY A:272 , SER A:325 , GLY A:326 , HOH A:2192 , HOH A:2403 , HOH A:2404 , HOH A:2406 , HOH A:2407 , HOH A:2408 , HOH A:2410 , HOH A:2411 , GLN C:83 , THR C:187 , ASP C:188 , THR C:189 , HOH C:2206 , LEU D:139
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 191 RESIDUES 1354 TO 1358
19
CC1
SOFTWARE
GLN A:83 , THR A:187 , THR A:189 , NAG B:1356 , ARG C:26 , ASN C:142 , VAL C:190 , ASN C:191 , ASN C:248 , GLY C:272 , SER C:325 , GLY C:326 , HOH C:2342 , HOH C:2343 , HOH C:2344 , HOH C:2345
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 191 RESIDUES 1354 TO 1358
20
CC2
SOFTWARE
GLN B:83 , ARG B:186 , THR B:187 , ASP B:188 , THR B:189 , HOH B:2186 , VAL D:190 , ASN D:191 , HOH D:2336 , HOH D:2337 , HOH D:2338
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 191 RESIDUES 1354 TO 1355
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gqga_ (A:)
1b: SCOP_d1gqgb_ (B:)
1c: SCOP_d1gqgc_ (C:)
1d: SCOP_d1gqgd_ (D:)
View:
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Classes
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(
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Folds
(
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(
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Superfamilies
(
)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Quercetin 2,3-dioxygenase-like
(7)
Protein domain
:
Quercetin 2,3-dioxygenase
(5)
Aspergillus japonicus [TaxId: 34381]
(5)
1a
d1gqga_
A:
1b
d1gqgb_
B:
1c
d1gqgc_
C:
1d
d1gqgd_
D:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1gqgA02 (A:206-350)
1b: CATH_1gqgB02 (B:206-350)
1c: CATH_1gqgC01 (C:3-21,C:222-342)
1d: CATH_1gqgA01 (A:3-145)
1e: CATH_1gqgB01 (B:4-145)
1f: CATH_1gqgD01 (D:4-145)
1g: CATH_1gqgD02 (D:206-350)
1h: CATH_1gqgC02 (C:22-221)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Aspergillus japonicus. Organism_taxid: 34381.
(4)
1a
1gqgA02
A:206-350
1b
1gqgB02
B:206-350
1c
1gqgC01
C:3-21,C:222-342
1d
1gqgA01
A:3-145
1e
1gqgB01
B:4-145
1f
1gqgD01
D:4-145
1g
1gqgD02
D:206-350
1h
1gqgC02
C:22-221
[
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Pfam Domains
(0, 0)
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all PFAM domains
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