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1GQB
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
HUMAN MIR-RECEPTOR, REPEAT 11
Authors
:
R. Von Buelow, M. Dauter, Z. Dauter, K. R. Rajashankar, S. Grimme, B. Schmidt, K. Von Figura, I. Uson
Date
:
22 Nov 01 (Deposition) - 05 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Receptor, Mir-Receptor, Igf-Ii Receptor, Transport, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Uson, B. Schmidt, R. Von Buelow, S. Grimme, K. Von Figura, M. Dauter, K. R. Rajashankar, Z. Dauter, G. M. Sheldrick
Locating The Anomalous Scatterer Substructures In Halide And Sulfur Phasing
Acta Crystallogr. , Sect. D V. 59 57 2003
[
close entry info
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
10
Ligand/Ion
BROMIDE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:89 , SER A:132 , HIS A:134
BINDING SITE FOR RESIDUE BR A1142
2
AC2
SOFTWARE
TYR A:35 , LEU A:40 , GLY A:61 , GLN A:62
BINDING SITE FOR RESIDUE BR A1143
3
AC3
SOFTWARE
ASP A:87 , LYS A:100
BINDING SITE FOR RESIDUE BR A1144
4
AC4
SOFTWARE
LYS B:72
BINDING SITE FOR RESIDUE BR B1141
5
AC5
SOFTWARE
TYR B:35 , LEU B:40 , GLY B:61 , GLN B:62 , HOH B:2051
BINDING SITE FOR RESIDUE BR B1142
6
AC6
SOFTWARE
SER B:132 , HIS B:134 , BR B:1144
BINDING SITE FOR RESIDUE BR B1143
7
AC7
SOFTWARE
SER B:66 , BR B:1143 , HOH B:2030
BINDING SITE FOR RESIDUE BR B1144
8
AC8
SOFTWARE
LEU B:122
BINDING SITE FOR RESIDUE BR B1145
9
AC9
SOFTWARE
THR B:135 , HOH B:2062
BINDING SITE FOR RESIDUE BR B1146
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(3, 6)
Info
All Exons
Exon 1.32 (A:6-17 | B:7-17)
Exon 1.33 (A:17-57 | B:17-57)
Exon 1.34a (A:57-140 (gaps) | B:57-140 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.31/1.32
2: Boundary 1.32/1.33
3: Boundary 1.33/1.34a
4: Boundary 1.34a/1.35a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000356956
1
ENSE00001375794
chr6:
160390131-160390427
297
MPRI_HUMAN
1-50
50
0
-
-
1.2b
ENST00000356956
2b
ENSE00001086779
chr6:
160412216-160412355
140
MPRI_HUMAN
50-97
48
0
-
-
1.3b
ENST00000356956
3b
ENSE00001086761
chr6:
160430042-160430166
125
MPRI_HUMAN
97-138
42
0
-
-
1.4b
ENST00000356956
4b
ENSE00001086760
chr6:
160431719-160431817
99
MPRI_HUMAN
139-171
33
0
-
-
1.5b
ENST00000356956
5b
ENSE00001086769
chr6:
160445604-160445736
133
MPRI_HUMAN
172-216
45
0
-
-
1.6
ENST00000356956
6
ENSE00001086768
chr6:
160448217-160448346
130
MPRI_HUMAN
216-259
44
0
-
-
1.7
ENST00000356956
7
ENSE00001086798
chr6:
160450582-160450687
106
MPRI_HUMAN
259-294
36
0
-
-
1.8
ENST00000356956
8
ENSE00001086791
chr6:
160453583-160453745
163
MPRI_HUMAN
295-349
55
0
-
-
1.9
ENST00000356956
9
ENSE00001086849
chr6:
160453974-160454139
166
MPRI_HUMAN
349-404
56
0
-
-
1.10
ENST00000356956
10
ENSE00001086784
chr6:
160455451-160455554
104
MPRI_HUMAN
404-439
36
0
-
-
1.11
ENST00000356956
11
ENSE00001086790
chr6:
160461592-160461756
165
MPRI_HUMAN
439-494
56
0
-
-
1.12
ENST00000356956
12
ENSE00001086772
chr6:
160464180-160464320
141
MPRI_HUMAN
494-541
48
0
-
-
1.13
ENST00000356956
13
ENSE00001086774
chr6:
160465546-160465689
144
MPRI_HUMAN
541-589
49
0
-
-
1.14a
ENST00000356956
14a
ENSE00001086759
chr6:
160466777-160466914
138
MPRI_HUMAN
589-635
47
0
-
-
1.15
ENST00000356956
15
ENSE00002155529
chr6:
160467530-160467677
148
MPRI_HUMAN
635-684
50
0
-
-
1.16
ENST00000356956
16
ENSE00002192765
chr6:
160468191-160468368
178
MPRI_HUMAN
684-743
60
0
-
-
1.17b
ENST00000356956
17b
ENSE00001086771
chr6:
160468824-160468939
116
MPRI_HUMAN
744-782
39
0
-
-
1.18
ENST00000356956
18
ENSE00001086764
chr6:
160469407-160469575
169
MPRI_HUMAN
782-838
57
0
-
-
1.19a
ENST00000356956
19a
ENSE00001086781
chr6:
160471505-160471684
180
MPRI_HUMAN
839-898
60
0
-
-
1.20b
ENST00000356956
20b
ENSE00001086850
chr6:
160477456-160477557
102
MPRI_HUMAN
899-932
34
0
-
-
1.21
ENST00000356956
21
ENSE00001086860
chr6:
160479055-160479156
102
MPRI_HUMAN
933-966
34
0
-
-
1.22
ENST00000356956
22
ENSE00001086788
chr6:
160479938-160480130
193
MPRI_HUMAN
967-1031
65
0
-
-
1.23
ENST00000356956
23
ENSE00001086789
chr6:
160481579-160481749
171
MPRI_HUMAN
1031-1088
58
0
-
-
1.24
ENST00000356956
24
ENSE00001086861
chr6:
160482535-160482678
144
MPRI_HUMAN
1088-1136
49
0
-
-
1.25
ENST00000356956
25
ENSE00001086780
chr6:
160482785-160482960
176
MPRI_HUMAN
1136-1194
59
0
-
-
1.26
ENST00000356956
26
ENSE00001086796
chr6:
160483564-160483651
88
MPRI_HUMAN
1195-1224
30
0
-
-
1.27
ENST00000356956
27
ENSE00001086799
chr6:
160484447-160484662
216
MPRI_HUMAN
1224-1296
73
0
-
-
1.28
ENST00000356956
28
ENSE00001086848
chr6:
160485433-160485563
131
MPRI_HUMAN
1296-1339
44
0
-
-
1.29
ENST00000356956
29
ENSE00001086767
chr6:
160485836-160485933
98
MPRI_HUMAN
1340-1372
33
0
-
-
1.30
ENST00000356956
30
ENSE00001086793
chr6:
160489281-160489417
137
MPRI_HUMAN
1372-1418
47
0
-
-
1.31
ENST00000356956
31
ENSE00001086846
chr6:
160490900-160491090
191
MPRI_HUMAN
1418-1481
64
0
-
-
1.32
ENST00000356956
32
ENSE00001086762
chr6:
160492942-160493068
127
MPRI_HUMAN
1482-1524
43
2
A:6-17
B:7-17
12
11
1.33
ENST00000356956
33
ENSE00001086853
chr6:
160493797-160493916
120
MPRI_HUMAN
1524-1564
41
2
A:17-57
B:17-57
41
41
1.34a
ENST00000356956
34a
ENSE00001086773
chr6:
160494245-160494501
257
MPRI_HUMAN
1564-1649
86
2
A:57-140 (gaps)
B:57-140 (gaps)
84
84
1.35a
ENST00000356956
35a
ENSE00001086785
chr6:
160494789-160495007
219
MPRI_HUMAN
1650-1722
73
0
-
-
1.36
ENST00000356956
36
ENSE00001086782
chr6:
160496879-160497028
150
MPRI_HUMAN
1723-1772
50
0
-
-
1.37
ENST00000356956
37
ENSE00001086863
chr6:
160499233-160499394
162
MPRI_HUMAN
1773-1826
54
0
-
-
1.38
ENST00000356956
38
ENSE00001086847
chr6:
160500612-160500819
208
MPRI_HUMAN
1827-1896
70
0
-
-
1.39
ENST00000356956
39
ENSE00001086859
chr6:
160501161-160501307
147
MPRI_HUMAN
1896-1945
50
0
-
-
1.40
ENST00000356956
40
ENSE00001086855
chr6:
160504982-160505216
235
MPRI_HUMAN
1945-2023
79
0
-
-
1.41a
ENST00000356956
41a
ENSE00001086858
chr6:
160506027-160506163
137
MPRI_HUMAN
2023-2069
47
0
-
-
1.42
ENST00000356956
42
ENSE00002173935
chr6:
160509065-160509179
115
MPRI_HUMAN
2069-2107
39
0
-
-
1.43
ENST00000356956
43
ENSE00002187746
chr6:
160510139-160510285
147
MPRI_HUMAN
2107-2156
50
0
-
-
1.44a
ENST00000356956
44a
ENSE00001086857
chr6:
160510948-160511135
188
MPRI_HUMAN
2156-2219
64
0
-
-
1.45a
ENST00000356956
45a
ENSE00001086758
chr6:
160517471-160517657
187
MPRI_HUMAN
2219-2281
63
0
-
-
1.46
ENST00000356956
46
ENSE00002180712
chr6:
160523551-160523703
153
MPRI_HUMAN
2281-2332
52
0
-
-
1.47
ENST00000356956
47
ENSE00002196950
chr6:
160524778-160524847
70
MPRI_HUMAN
2332-2355
24
0
-
-
1.48
ENST00000356956
48
ENSE00001405315
chr6:
160525706-160527583
1878
MPRI_HUMAN
2356-2491
136
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gqba_ (A:)
1b: SCOP_d1gqbb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
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)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Mannose 6-phosphate receptor domain
(26)
Superfamily
:
Mannose 6-phosphate receptor domain
(26)
Family
:
Mannose 6-phosphate receptor domain
(26)
Protein domain
:
Cation-independent mannose-6-phosphate receptor (MIR-receptor)
(11)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1gqba_
A:
1b
d1gqbb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gqbA00 (A:6-140)
1b: CATH_1gqbB00 (B:7-140)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Homologous Superfamily
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Human (Homo sapiens)
(5)
1a
1gqbA00
A:6-140
1b
1gqbB00
B:7-140
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (49 KB)
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