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1GQ7
Asym. Unit
Info
Asym.Unit (277 KB)
Biol.Unit 1 (270 KB)
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(1)
Title
:
PROCLAVAMINATE AMIDINO HYDROLASE FROM STREPTOMYCES CLAVULIGERUS
Authors
:
J. M. Elkins, I. J. Clifton, H. Hernandez, C. V. Robinson, C. J. Schofield, K. S. Hewitson
Date
:
20 Nov 01 (Deposition) - 06 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hydrolase, Clavaminate, Clavaminic, Pah, Arginase, Antibiotic
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Elkins, I. J. Clifton, H. Hernandez, L. X. Doan, C. V. Robinson, C. J. Schofield, K. S. Hewitson
Oligomeric Structure Of Proclavaminic Acid Amidino Hydrolase: Evolution Of A Hydrolytic Enzyme In Clavulanic Acid Biosynthesis
Biochem. J. V. 366 423 2002
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
12
Ligand/Ion
MANGANESE (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:121 , ASP A:144 , ASP A:148 , ASP A:235 , MN A:351
BINDING SITE FOR RESIDUE MN A 350
02
AC2
SOFTWARE
ASP A:144 , HIS A:146 , ASP A:235 , ASP A:237 , MN A:350
BINDING SITE FOR RESIDUE MN A 351
03
AC3
SOFTWARE
HIS B:121 , ASP B:144 , ASP B:148 , ASP B:235 , MN B:351
BINDING SITE FOR RESIDUE MN B 350
04
AC4
SOFTWARE
ASP B:144 , HIS B:146 , ASP B:235 , ASP B:237 , MN B:350
BINDING SITE FOR RESIDUE MN B 351
05
AC5
SOFTWARE
HIS C:121 , ASP C:144 , ASP C:148 , ASP C:235 , MN C:351
BINDING SITE FOR RESIDUE MN C 350
06
AC6
SOFTWARE
ASP C:144 , HIS C:146 , ASP C:235 , ASP C:237 , MN C:350
BINDING SITE FOR RESIDUE MN C 351
07
AC7
SOFTWARE
HIS D:121 , ASP D:144 , ASP D:148 , ASP D:235 , MN D:351
BINDING SITE FOR RESIDUE MN D 350
08
AC8
SOFTWARE
ASP D:144 , HIS D:146 , ASP D:235 , ASP D:237 , MN D:350
BINDING SITE FOR RESIDUE MN D 351
09
AC9
SOFTWARE
HIS E:121 , ASP E:144 , ASP E:148 , ASP E:235 , MN E:351
BINDING SITE FOR RESIDUE MN E 350
10
BC1
SOFTWARE
ASP E:144 , HIS E:146 , ASP E:235 , ASP E:237 , MN E:350 , HOH E:2076
BINDING SITE FOR RESIDUE MN E 351
11
BC2
SOFTWARE
HIS F:121 , ASP F:144 , ASP F:148 , ASP F:235 , MN F:351
BINDING SITE FOR RESIDUE MN F 350
12
BC3
SOFTWARE
ASP F:144 , HIS F:146 , ASP F:235 , ASP F:237 , MN F:350
BINDING SITE FOR RESIDUE MN F 351
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_2 (A:20-309,B:20-309,C:20-309,D:20-30...)
2: ARGINASE_1 (A:233-254,B:233-254,C:233-254,D:23...)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_2
PS51409
Arginase family profile.
PAH_STRC2
20-313
6
A:20-309
B:20-309
C:20-309
D:20-309
E:20-309
F:20-309
PAH_STRCL
20-313
6
A:20-309
B:20-309
C:20-309
D:20-309
E:20-309
F:20-309
2
ARGINASE_1
PS01053
Arginase family signature.
PAH_STRC2
233-254
6
A:233-254
B:233-254
C:233-254
D:233-254
E:233-254
F:233-254
PAH_STRCL
233-254
6
A:233-254
B:233-254
C:233-254
D:233-254
E:233-254
F:233-254
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1gq7a_ (A:)
1b: SCOP_d1gq7b_ (B:)
1c: SCOP_d1gq7c_ (C:)
1d: SCOP_d1gq7d_ (D:)
1e: SCOP_d1gq7e_ (E:)
1f: SCOP_d1gq7f_ (F:)
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Classes
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Proclavaminate amidino hydrolase
(2)
Streptomyces clavuligerus [TaxId: 1901]
(2)
1a
d1gq7a_
A:
1b
d1gq7b_
B:
1c
d1gq7c_
C:
1d
d1gq7d_
D:
1e
d1gq7e_
E:
1f
d1gq7f_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1gq7A00 (A:9-309)
1b: CATH_1gq7B00 (B:9-309)
1c: CATH_1gq7C00 (C:9-309)
1d: CATH_1gq7D00 (D:9-309)
1e: CATH_1gq7E00 (E:9-309)
1f: CATH_1gq7F00 (F:9-309)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Streptomyces clavuligerus. Organism_taxid: 1901.
(2)
1a
1gq7A00
A:9-309
1b
1gq7B00
B:9-309
1c
1gq7C00
C:9-309
1d
1gq7D00
D:9-309
1e
1gq7E00
E:9-309
1f
1gq7F00
F:9-309
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Pfam Domains
(0, 0)
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Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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