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1GPZ
Biol. Unit 1
Info
Asym.Unit (130 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE ZYMOGEN CATALYTIC DOMAIN OF COMPLEMENT PROTEASE C1R
Authors
:
M. Budayova-Spano, J. C. Fontecilla-Camps, C. Gaboriaud
Date
:
15 Nov 01 (Deposition) - 31 Jul 02 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Activation, Complement, Innate Immunity, Modular Structure, Serine Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Budayova-Spano, M. Lacroix, N. Thielens, G. Arlaud, J. C. Fontecilla-Camps, C. Gaboriaud
The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1R Reveals That A Disruptive Mechanica Stress Is Required To Trigger Activation Of The C1 Complex.
Embo J. V. 21 231 2002
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:295 , HIS A:335 , ASN A:367 , HIS A:390 , TYR A:394 , ASN A:564 , THR A:566 , PHE A:567 , ASP A:645 , PRO A:646 , ASN A:647
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 564 RESIDUES 2001 TO 2003
2
AC2
SOFTWARE
ILE A:304 , GLN A:305 , ASN A:306 , LEU A:307 , GLN B:495 , SER B:496 , ASN B:497 , ALA B:498 , SER B:499
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 497 RESIDUES 1001 TO 1004
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_077113 (C292W, chain A, )
2: VAR_077114 (C321R, chain A, )
3: VAR_077115 (C341F, chain A, )
4: VAR_077116 (W347C, chain A, )
5: VAR_077117 (C354W, chain A, )
6: VAR_077119 (W418R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_077113
C
309
W
C1R_HUMAN
Disease (EDSPD1)
---
A
C
292
W
2
UniProt
VAR_077114
C
338
R
C1R_HUMAN
Disease (EDSPD1)
---
A
C
321
R
3
UniProt
VAR_077115
C
358
F
C1R_HUMAN
Disease (EDSPD1)
---
A
C
341
F
4
UniProt
VAR_077116
W
364
C
C1R_HUMAN
Unclassified (EDSPD1)
---
A
W
347
C
5
UniProt
VAR_077117
C
371
W
C1R_HUMAN
Disease (EDSPD1)
---
A
C
354
W
6
UniProt
VAR_077119
W
435
R
C1R_HUMAN
Unclassified (EDSPD1)
---
A
W
418
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:290-356,A:357-432)
2: TRYPSIN_DOM (A:447-685)
3: TRYPSIN_SER (A:631-642)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
C1R_HUMAN
307-373
374-449
2
A:290-356
-
A:357-432
-
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
C1R_HUMAN
464-702
1
A:447-685
-
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
C1R_HUMAN
648-659
1
A:631-642
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1gpza1 (A:434-685)
1b: SCOP_d1gpzb1 (B:434-685)
2a: SCOP_d1gpza2 (A:290-357)
2b: SCOP_d1gpza3 (A:358-433)
2c: SCOP_d1gpzb2 (B:290-357)
2d: SCOP_d1gpzb3 (B:358-433)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Complement C1R protease, catalytic domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1gpza1
A:434-685
1b
d1gpzb1
B:434-685
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement C1R protease domains
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1gpza2
A:290-357
2b
d1gpza3
A:358-433
2c
d1gpzb2
B:290-357
2d
d1gpzb3
B:358-433
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1gpzA03 (A:560-675)
1b: CATH_1gpzB03 (B:560-675)
1c: CATH_1gpzB01 (B:461-558,B:676-681)
1d: CATH_1gpzA01 (A:461-558,A:676-681)
1e: CATH_1gpzA02 (A:442-460)
1f: CATH_1gpzB02 (B:442-460)
2a: CATH_1gpzB04 (B:357-433)
2b: CATH_1gpzA04 (A:357-433)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1gpzA03
A:560-675
1b
1gpzB03
B:560-675
1c
1gpzB01
B:461-558,B:676-681
1d
1gpzA01
A:461-558,A:676-681
1e
1gpzA02
A:442-460
1f
1gpzB02
B:442-460
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
2a
1gpzB04
B:357-433
2b
1gpzA04
A:357-433
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (130 KB)
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