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1GPJ
Asym. Unit
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Asym.Unit (81 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
GLUTAMYL-TRNA REDUCTASE FROM METHANOPYRUS KANDLERI
Authors
:
J. Moser, W. -D. Schubert, V. Beier, I. Bringemeier, D. Jahn, D. W. Heinz
Date
:
05 Nov 01 (Deposition) - 04 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Reductase, Trna-Dependent Tetrapyrrole Biosynthesis, Glutamyl Trna- Reductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Moser, W. -D. Schubert, V. Beier, I. Bringemeier, D. Jahn, D. W. Heinz
V-Shaped Structure Of Glutamyl-Trna Reductase, The First Enzyme Of Trna-Dependent Tetrapyrrole Biosynthesis.
Embo J. V. 20 6583 2001
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: GLUTAMIC ACID (GLUa)
3a: (2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETH... (GMCa)
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No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
3
GMC
1
Ligand/Ion
(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:23 , GLU A:25 , SER A:48 , GLU A:101 , GLU A:1406 , HOH A:2346
BINDING SITE FOR RESIDUE GMC A1405
2
AC2
SOFTWARE
THR A:47 , ASN A:49 , ARG A:50 , SER A:94 , GLU A:99 , GLU A:101 , ILE A:102 , GLN A:105 , GMC A:1405 , HOH A:2055 , HOH A:2347
BINDING SITE FOR RESIDUE GLU A1406
3
AC3
SOFTWARE
GLU A:99 , GLN A:100 , ALA A:147 , VAL A:148 , SER A:149 , SER A:152 , ARG A:300 , HOH A:2349 , HOH A:2350 , HOH A:2352 , HOH A:2353 , HOH A:2354
BINDING SITE FOR RESIDUE CIT A1407
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLUTR (A:84-107)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTR
PS00747
Glutamyl-tRNA reductase signature.
HEM1_METKA
84-107
1
A:84-107
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1gpja1 (A:303-404)
2a: SCOP_d1gpja3 (A:1-143)
3a: SCOP_d1gpja2 (A:144-302)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Glutamyl tRNA-reductase dimerization domain
(1)
Superfamily
:
Glutamyl tRNA-reductase dimerization domain
(1)
Family
:
Glutamyl tRNA-reductase dimerization domain
(1)
Protein domain
:
Glutamyl tRNA-reductase dimerization domain
(1)
Methanopyrus kandleri [TaxId: 2320]
(1)
1a
d1gpja1
A:303-404
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Glutamyl tRNA-reductase catalytic, N-terminal domain
(1)
Family
:
Glutamyl tRNA-reductase catalytic, N-terminal domain
(1)
Protein domain
:
Glutamyl tRNA-reductase catalytic, N-terminal domain
(1)
Methanopyrus kandleri [TaxId: 2320]
(1)
2a
d1gpja3
A:1-143
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamyl tRNA-reductase middle domain
(1)
Methanopyrus kandleri [TaxId: 2320]
(1)
3a
d1gpja2
A:144-302
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1gpjA02 (A:146-299)
2a: CATH_1gpjA03 (A:315-404)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
1a
1gpjA02
A:146-299
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
(155)
Homologous Superfamily
:
Glutamyl-tRNA reductase dimerization domain, domain 3
(1)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
2a
1gpjA03
A:315-404
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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