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1GPH
Asym. Unit
Info
Asym.Unit (281 KB)
Biol.Unit 1 (272 KB)
Biol.Unit 2 (139 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
STRUCTURE OF THE ALLOSTERIC REGULATORY ENZYME OF PURINE BIOSYNTHESIS
Authors
:
J. L. Smith
Date
:
20 Apr 94 (Deposition) - 31 Jul 94 (Release) - 21 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (1x)
Biol. Unit 2: 1,2 (1x)
Biol. Unit 3: 3,4 (1x)
Keywords
:
Transferase, Glutamine Amidotransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Smith, E. J. Zaluzec, J. P. Wery, L. Niu, R. L. Switzer, H. Zalkin, Y. Satow
Structure Of The Allosteric Regulatory Enzyme Of Purine Biosynthesis.
Science V. 264 1427 1994
[
close entry info
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
1e: ADENOSINE MONOPHOSPHATE (AMPe)
1f: ADENOSINE MONOPHOSPHATE (AMPf)
1g: ADENOSINE MONOPHOSPHATE (AMPg)
1h: ADENOSINE MONOPHOSPHATE (AMPh)
2a: IRON/SULFUR CLUSTER (SF4a)
2b: IRON/SULFUR CLUSTER (SF4b)
2c: IRON/SULFUR CLUSTER (SF4c)
2d: IRON/SULFUR CLUSTER (SF4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
8
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: A11 (UNKNOWN)
02: A12 (UNKNOWN)
03: A21 (UNKNOWN)
04: A22 (UNKNOWN)
05: A31 (UNKNOWN)
06: A32 (UNKNOWN)
07: A41 (UNKNOWN)
08: A42 (UNKNOWN)
09: AC1 (SOFTWARE)
10: AC2 (SOFTWARE)
11: AC3 (SOFTWARE)
12: AC4 (SOFTWARE)
13: AC5 (SOFTWARE)
14: AC6 (SOFTWARE)
15: AC7 (SOFTWARE)
16: AC8 (SOFTWARE)
17: AC9 (SOFTWARE)
18: BC1 (SOFTWARE)
19: BC2 (SOFTWARE)
20: BC3 (SOFTWARE)
21: FS1 (UNKNOWN)
22: FS2 (UNKNOWN)
23: FS3 (UNKNOWN)
24: FS4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
A11
UNKNOWN
ASP 1:345 , ASP 1:346 , SER 1:347 , ILE 1:348 , VAL 1:349 , ARG 1:350 , GLY 1:351 , THR 1:352 , THR 1:353 , AMP 1:467
NULL
02
A12
UNKNOWN
TYR 1:242 , PHE 1:243 , SER 1:244 , ARG 1:245 , PRO 1:246 , ASP 1:247 , LYS 1:305 , AMP 1:468 , LYS 2:305 , ASN 2:306 , ARG 2:307
NULL
03
A21
UNKNOWN
ASP 2:345 , ASP 2:346 , SER 2:347 , ILE 2:348 , VAL 2:349 , ARG 2:350 , GLY 2:351 , THR 2:352 , THR 2:353 , AMP 2:467
NULL
04
A22
UNKNOWN
TYR 2:242 , PHE 2:243 , SER 2:244 , ARG 2:245 , PRO 2:246 , ASP 2:247 , LYS 2:305 , AMP 2:468 , LYS 1:305 , ASN 1:306 , ARG 1:307
NULL
05
A31
UNKNOWN
ASP 3:345 , ASP 3:346 , SER 3:347 , ILE 3:348 , VAL 3:349 , ARG 3:350 , GLY 3:351 , THR 3:352 , THR 3:353 , AMP 3:467
NULL
06
A32
UNKNOWN
TYR 3:242 , PHE 3:243 , SER 3:244 , ARG 3:245 , PRO 3:246 , ASP 3:247 , LYS 3:305 , AMP 3:468 , LYS 4:305 , ASN 4:306 , ARG 4:307
NULL
07
A41
UNKNOWN
ASP 4:345 , ASP 4:346 , SER 4:347 , ILE 4:348 , VAL 4:349 , ARG 4:350 , GLY 4:351 , THR 4:352 , THR 4:353 , AMP 4:467
NULL
08
A42
UNKNOWN
TYR 4:242 , PHE 4:243 , SER 4:244 , ARG 4:245 , PRO 4:246 , ASP 4:247 , LYS 4:305 , AMP 4:468 , LYS 3:305 , ASN 3:306 , ARG 3:307
NULL
09
AC1
SOFTWARE
CYS 1:236 , SER 1:237 , CYS 1:382 , TYR 1:384 , THR 1:388 , CYS 1:437 , ALA 1:439 , CYS 1:440
BINDING SITE FOR RESIDUE SF4 1 466
10
AC2
SOFTWARE
TYR 1:242 , SER 1:283 , ASP 1:345 , ASP 1:346 , SER 1:347 , VAL 1:349 , ARG 1:350 , GLY 1:351 , THR 1:352 , THR 1:353 , THR 1:388 , SER 1:389
BINDING SITE FOR RESIDUE AMP 1 467
11
AC3
SOFTWARE
TYR 1:242 , SER 1:244 , ARG 1:245 , PRO 1:246 , ARG 1:259 , PRO 1:281 , ASP 1:282 , SER 1:283 , LYS 1:305 , ILE 2:304 , LYS 2:305 , ARG 2:307
BINDING SITE FOR RESIDUE AMP 1 468
12
AC4
SOFTWARE
CYS 2:236 , SER 2:237 , CYS 2:382 , TYR 2:384 , THR 2:388 , CYS 2:437 , CYS 2:440
BINDING SITE FOR RESIDUE SF4 2 466
13
AC5
SOFTWARE
TYR 2:73 , TYR 2:242 , SER 2:283 , ASP 2:345 , ASP 2:346 , SER 2:347 , VAL 2:349 , ARG 2:350 , GLY 2:351 , THR 2:352 , THR 2:353 , ASP 2:387
BINDING SITE FOR RESIDUE AMP 2 467
14
AC6
SOFTWARE
ILE 1:304 , LYS 1:305 , ARG 1:307 , TYR 2:242 , SER 2:244 , ARG 2:245 , ARG 2:259 , PRO 2:281 , ASP 2:282 , SER 2:283 , LYS 2:305
BINDING SITE FOR RESIDUE AMP 2 468
15
AC7
SOFTWARE
CYS 3:236 , SER 3:237 , MET 3:238 , CYS 3:382 , TYR 3:384 , THR 3:388 , CYS 3:437 , ALA 3:439 , CYS 3:440
BINDING SITE FOR RESIDUE SF4 3 466
16
AC8
SOFTWARE
MET 3:238 , TYR 3:242 , SER 3:283 , ASP 3:345 , ASP 3:346 , SER 3:347 , VAL 3:349 , ARG 3:350 , GLY 3:351 , THR 3:352 , THR 3:353 , THR 3:388 , SER 3:389 , AMP 3:468
BINDING SITE FOR RESIDUE AMP 3 467
17
AC9
SOFTWARE
TYR 3:242 , SER 3:244 , ARG 3:245 , PRO 3:246 , ARG 3:259 , PRO 3:281 , ASP 3:282 , SER 3:283 , LYS 3:305 , AMP 3:467 , LYS 4:305 , ARG 4:307
BINDING SITE FOR RESIDUE AMP 3 468
18
BC1
SOFTWARE
CYS 4:236 , SER 4:237 , MET 4:238 , CYS 4:382 , TYR 4:384 , THR 4:388 , CYS 4:437 , CYS 4:440
BINDING SITE FOR RESIDUE SF4 4 466
19
BC2
SOFTWARE
TYR 4:242 , SER 4:283 , ASP 4:345 , ASP 4:346 , SER 4:347 , VAL 4:349 , ARG 4:350 , GLY 4:351 , THR 4:352 , THR 4:353 , ASP 4:387 , THR 4:388 , SER 4:389
BINDING SITE FOR RESIDUE AMP 4 467
20
BC3
SOFTWARE
ILE 3:304 , LYS 3:305 , ARG 3:307 , TYR 4:242 , SER 4:244 , ARG 4:245 , PRO 4:246 , ARG 4:259 , PRO 4:281 , ASP 4:282 , SER 4:283 , LYS 4:305
BINDING SITE FOR RESIDUE AMP 4 468
21
FS1
UNKNOWN
SF4 1:466 , CYS 1:236 , CYS 1:382 , CYS 1:437 , CYS 1:440
NULL
22
FS2
UNKNOWN
SF4 2:466 , CYS 2:236 , CYS 2:382 , CYS 2:437 , CYS 2:440
NULL
23
FS3
UNKNOWN
SF4 3:466 , CYS 3:236 , CYS 3:382 , CYS 3:437 , CYS 3:440
NULL
24
FS4
UNKNOWN
SF4 4:466 , CYS 4:236 , CYS 4:382 , CYS 4:437 , CYS 4:440
NULL
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GATASE_TYPE_2 (1:1-220,2:1-220,3:1-220,4:1-220)
2: PUR_PYR_PR_TRANSFER (1:341-353,2:341-353,3:341-353,4:34...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GATASE_TYPE_2
PS51278
Glutamine amidotransferase type 2 domain profile.
PUR1_BACSU
12-231
4
1:1-220
2:1-220
3:1-220
4:1-220
2
PUR_PYR_PR_TRANSFER
PS00103
Purine/pyrimidine phosphoribosyl transferases signature.
PUR1_BACSU
352-364
4
1:341-353
2:341-353
3:341-353
4:341-353
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1gph12 (1:1-234)
1b: SCOP_d1gph22 (2:1-234)
1c: SCOP_d1gph32 (3:1-234)
1d: SCOP_d1gph42 (4:1-234)
2a: SCOP_d1gph11 (1:235-465)
2b: SCOP_d1gph21 (2:235-465)
2c: SCOP_d1gph31 (3:235-465)
2d: SCOP_d1gph41 (4:235-465)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Class II glutamine amidotransferases
(27)
Protein domain
:
Glutamine PRPP amidotransferase, N-terminal domain
(7)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d1gph12
1:1-234
1b
d1gph22
2:1-234
1c
d1gph32
3:1-234
1d
d1gph42
4:1-234
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Glutamine PRPP amidotransferase, C-terminal domain
(7)
Bacillus subtilis [TaxId: 1423]
(2)
2a
d1gph11
1:235-465
2b
d1gph21
2:235-465
2c
d1gph31
3:235-465
2d
d1gph41
4:235-465
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1gph102 (1:260-305,1:328-379,1:391-424)
1b: CATH_1gph202 (2:260-305,2:328-379,2:391-424)
1c: CATH_1gph302 (3:260-305,3:328-379,3:391-424)
1d: CATH_1gph402 (4:260-305,4:328-379,4:391-424)
2a: CATH_1gph101 (1:1-259,1:380-390,1:425-460)
2b: CATH_1gph201 (2:1-259,2:380-390,2:425-460)
2c: CATH_1gph301 (3:1-259,3:380-390,3:425-460)
2d: CATH_1gph401 (4:1-259,4:380-390,4:425-460)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Bacillus subtilis. Organism_taxid: 1423
(1)
1a
1gph102
1:260-305,1:328-379,1:391-424
1b
1gph202
2:260-305,2:328-379,2:391-424
1c
1gph302
3:260-305,3:328-379,3:391-424
1d
1gph402
4:260-305,4:328-379,4:391-424
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Bacillus subtilis. Organism_taxid: 1423
(1)
2a
1gph101
1:1-259,1:380-390,1:425-460
2b
1gph201
2:1-259,2:380-390,2:425-460
2c
1gph301
3:1-259,3:380-390,3:425-460
2d
1gph401
4:1-259,4:380-390,4:425-460
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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