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1GO4
Asym. Unit
Info
Asym.Unit (206 KB)
Biol.Unit 1 (200 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MAD1-MAD2 REVEALS A CONSERVED MAD2 BINDING MOTIF IN MAD1 AND CDC20.
Authors
:
L. Sironi, M. Mapelli, K. T. Jeang, A. Musacchio
Date
:
17 Oct 01 (Deposition) - 16 May 02 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Mitotic Spindle Checkpoint, Cell Cycle, Mitosis, Nuclear Pro
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Sironi, M. Mapelli, S. Knapp, A. Antoni, K. T. Jeang, A. Musacchio
Crystal Structure Of The Tetrameric Mad1-Mad2 Core Complex: Implications Of A 'Safety Belt' Binding Mechanism For The Spindle Checkpoint
Embo J. V. 21 2496 2002
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(8, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019712 (T500M, chain E/F/G/H, )
2: VAR_019713 (E511K, chain E/F/G/H, )
3: VAR_019714 (E516K, chain E/F/G/H, )
4: VAR_019715 (R556C, chain E/F/G/H, )
5: VAR_019716 (R556H, chain E/F/G/H, )
6: VAR_019717 (R558H, chain E/F/G/H, )
7: VAR_019718 (E569K, chain E/F/G/H, )
8: VAR_019719 (R572H, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019712
T
500
M
MD1L1_HUMAN
Polymorphism
193231481
E/F/G/H
T
500
M
2
UniProt
VAR_019713
E
511
K
MD1L1_HUMAN
Polymorphism
---
E/F/G/H
E
511
K
3
UniProt
VAR_019714
E
516
K
MD1L1_HUMAN
Unclassified
---
E/F/G/H
E
516
K
4
UniProt
VAR_019715
R
556
C
MD1L1_HUMAN
Unclassified
---
E/F/G/H
R
556
C
5
UniProt
VAR_019716
R
556
H
MD1L1_HUMAN
Unclassified
---
E/F/G/H
R
556
H
6
UniProt
VAR_019717
R
558
H
MD1L1_HUMAN
Unclassified
1801368
E/F/G/H
R
558
H
7
UniProt
VAR_019718
E
569
K
MD1L1_HUMAN
Unclassified
---
E/F/G/H
E
569
K
8
UniProt
VAR_019719
R
572
H
MD1L1_HUMAN
Unclassified
1801500
E/F/G/H
R
572
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HORMA (A:14-197,B:14-197,C:14-197,D:14-19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HORMA
PS50815
HORMA domain profile.
MD2L1_HUMAN
14-197
4
A:14-197
B:14-197
C:14-197
D:14-197
[
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]
Exons
(8, 32)
Info
All Exons
Exon 1.1a (A:8-25 | B:10-25 | C:10-25 | D:11-...)
Exon 1.2a (A:25-74 | B:25-74 | C:25-74 | D:25...)
Exon 1.3 (A:74-114 | B:74-114 | C:74-114 | D...)
Exon 1.4b (A:114-149 | B:114-149 | C:114-149 ...)
Exon 1.5c (A:149-203 | B:149-204 | C:149-204 ...)
Exon 2.28b (E:493-502 | F:493-502 | G:485-502 ...)
Exon 2.29 (E:502-532 | F:502-532 | G:502-532 ...)
Exon 2.31 (E:533-579 | F:533-579 | G:533-584 ...)
View:
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Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.3
04: Boundary 1.3/1.4b
05: Boundary 1.4b/1.5c
06: Boundary 1.5c/-
07: Boundary 2.26/2.28b
08: Boundary 2.28b/2.29
09: Boundary 2.29/2.31
10: Boundary 2.31/2.32b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000296509
1a
ENSE00001705676
chr4:
120988229-120987817
413
MD2L1_HUMAN
1-25
25
4
A:8-25
B:10-25
C:10-25
D:11-25
18
16
16
15
1.2a
ENST00000296509
2a
ENSE00001081494
chr4:
120986973-120986827
147
MD2L1_HUMAN
25-74
50
4
A:25-74
B:25-74
C:25-74
D:25-74
50
50
50
50
1.3
ENST00000296509
3
ENSE00001081493
chr4:
120983250-120983130
121
MD2L1_HUMAN
74-114
41
4
A:74-114
B:74-114
C:74-114
D:74-114
41
41
41
41
1.4b
ENST00000296509
4b
ENSE00001765948
chr4:
120982132-120982029
104
MD2L1_HUMAN
114-149
36
4
A:114-149
B:114-149
C:114-149
D:114-149
36
36
36
36
1.5c
ENST00000296509
5c
ENSE00001796865
chr4:
120981445-120980577
869
MD2L1_HUMAN
149-205
57
4
A:149-203
B:149-204
C:149-204
D:149-203
55
56
56
55
2.1b
ENST00000399654
1b
ENSE00001539482
chr7:
2272609-2272507
103
MD1L1_HUMAN
-
0
0
-
-
2.2a
ENST00000399654
2a
ENSE00001539480
chr7:
2270399-2270184
216
MD1L1_HUMAN
-
0
0
-
-
2.3b
ENST00000399654
3b
ENSE00002145713
chr7:
2269778-2269619
160
MD1L1_HUMAN
1-50
50
0
-
-
2.4b
ENST00000399654
4b
ENSE00001671509
chr7:
2265185-2265045
141
MD1L1_HUMAN
51-97
47
0
-
-
2.6
ENST00000399654
6
ENSE00002162295
chr7:
2262389-2262210
180
MD1L1_HUMAN
98-157
60
0
-
-
2.8b
ENST00000399654
8b
ENSE00000976254
chr7:
2259091-2258967
125
MD1L1_HUMAN
158-199
42
0
-
-
2.9
ENST00000399654
9
ENSE00000976255
chr7:
2257678-2257597
82
MD1L1_HUMAN
199-226
28
0
-
-
2.10
ENST00000399654
10
ENSE00000976256
chr7:
2255922-2255792
131
MD1L1_HUMAN
227-270
44
0
-
-
2.11b
ENST00000399654
11b
ENSE00000976257
chr7:
2255634-2255520
115
MD1L1_HUMAN
270-308
39
0
-
-
2.12a
ENST00000399654
12a
ENSE00002141654
chr7:
2252908-2252847
62
MD1L1_HUMAN
309-329
21
0
-
-
2.18
ENST00000399654
18
ENSE00000976259
chr7:
2188873-2188787
87
MD1L1_HUMAN
329-358
30
0
-
-
2.24a
ENST00000399654
24a
ENSE00001776916
chr7:
2108973-2108829
145
MD1L1_HUMAN
358-406
49
0
-
-
2.25b
ENST00000399654
25b
ENSE00001663966
chr7:
2054277-2054137
141
MD1L1_HUMAN
407-453
47
0
-
-
2.26
ENST00000399654
26
ENSE00001088371
chr7:
2041756-2041700
57
MD1L1_HUMAN
454-472
19
0
-
-
2.28b
ENST00000399654
28b
ENSE00001088370
chr7:
2020176-2020088
89
MD1L1_HUMAN
473-502
30
4
E:493-502
F:493-502
G:485-502
H:487-502
10
10
18
16
2.29
ENST00000399654
29
ENSE00002164012
chr7:
1997354-1997264
91
MD1L1_HUMAN
502-532
31
4
E:502-532
F:502-532
G:502-532
H:502-532
31
31
31
31
2.31
ENST00000399654
31
ENSE00001790935
chr7:
1976533-1976323
211
MD1L1_HUMAN
533-603
71
4
E:533-579
F:533-579
G:533-584
H:533-579
47
47
52
47
2.32b
ENST00000399654
32b
ENSE00002141225
chr7:
1938026-1937836
191
MD1L1_HUMAN
603-666
64
0
-
-
2.40d
ENST00000399654
40d
ENSE00001678984
chr7:
1855864-1855430
435
MD1L1_HUMAN
667-718
52
0
-
-
[
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1go4a_ (A:)
1b: SCOP_d1go4b_ (B:)
1c: SCOP_d1go4c_ (C:)
1d: SCOP_d1go4d_ (D:)
2a: SCOP_d1go4e_ (E:)
2b: SCOP_d1go4f_ (F:)
2c: SCOP_d1go4g_ (G:)
2d: SCOP_d1go4h_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
The spindle assembly checkpoint protein mad2
(8)
Superfamily
:
The spindle assembly checkpoint protein mad2
(8)
Family
:
The spindle assembly checkpoint protein mad2
(7)
Protein domain
:
The spindle assembly checkpoint protein mad2
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1go4a_
A:
1b
d1go4b_
B:
1c
d1go4c_
C:
1d
d1go4d_
D:
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Mitotic arrest deficient-like 1, Mad1
(1)
Family
:
Mitotic arrest deficient-like 1, Mad1
(1)
Protein domain
:
Mitotic arrest deficient-like 1, Mad1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1go4e_
E:
2b
d1go4f_
F:
2c
d1go4g_
G:
2d
d1go4h_
H:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1go4B00 (B:10-204)
1b: CATH_1go4C00 (C:10-204)
1c: CATH_1go4A00 (A:8-203)
1d: CATH_1go4D00 (D:11-203)
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(
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(
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
(4)
Homologous Superfamily
:
Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
(4)
Human (Homo sapiens)
(4)
1a
1go4B00
B:10-204
1b
1go4C00
C:10-204
1c
1go4A00
A:8-203
1d
1go4D00
D:11-203
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain H
Asymmetric Unit 1
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Asym.Unit (206 KB)
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