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1GNQ
Biol. Unit 1
Info
Asym.Unit (33 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP
Authors
:
A. Scheidig, S. M. Franken, J. E. T. Corrie, G. P. Reid, A. Wittinghofer, E. F. Pai, R. S. Goody
Date
:
11 May 95 (Deposition) - 31 Jul 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Gtp Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Scheidig, S. M. Franken, J. E. Corrie, G. P. Reid, A. Wittinghofer, E. F. Pai, R. S. Goody
X-Ray Crystal Structure Analysis Of The Catalytic Domain Of The Oncogene Product P21H-Ras Complexed With Caged Gtp And Mant Dgppnhp.
J. Mol. Biol. V. 253 132 1995
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2... (CAGa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAG
2
Ligand/Ion
GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYLESTER]
2
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:17 , THR A:35 , ASP A:57 , THR A:58 , CAG A:167 , HOH A:172 , HOH A:173
BINDING SITE FOR RESIDUE MG A 168
2
AC2
SOFTWARE
GLY A:12 , GLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , ALA A:18 , PHE A:28 , VAL A:29 , ASP A:30 , TYR A:32 , PRO A:34 , GLY A:60 , ASN A:116 , LYS A:117 , ASP A:119 , SER A:145 , ALA A:146 , MG A:168 , HOH A:172
BINDING SITE FOR RESIDUE CAG A 167
[
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]
SAPs(SNPs)/Variants
(17, 34)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_026106 (G12A, chain A, )
02: VAR_045975 (G12C, chain A, )
03: VAR_068816 (G12D, chain A, )
04: VAR_045976 (G12E, chain A, )
05: VAR_006837 (G12S, chain A, )
06: VAR_006836 (G12V, chain A, )
07: VAR_026107 (G13C, chain A, )
08: VAR_026108 (G13D, chain A, )
09: VAR_068817 (G13R, chain A, )
10: VAR_045977 (Q22K, chain A, )
11: VAR_045978 (T58I, chain A, )
12: VAR_045979 (Q61K, chain A, )
13: VAR_006838 (Q61L, chain A, )
14: VAR_045980 (E63K, chain A, )
15: VAR_045981 (K117R, chain A, )
16: VAR_045982 (A146T, chain A, )
17: VAR_045983 (A146V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026106
G
12
A
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
A
02
UniProt
VAR_045975
G
12
C
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
C
03
UniProt
VAR_068816
G
12
D
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
D
04
UniProt
VAR_045976
G
12
E
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
E
05
UniProt
VAR_006837
G
12
S
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
S
06
UniProt
VAR_006836
G
12
V
RASH_HUMAN
Disease (CSTLO)
---
A
G
12
V
07
UniProt
VAR_026107
G
13
C
RASH_HUMAN
Disease (CSTLO)
---
A
G
13
C
08
UniProt
VAR_026108
G
13
D
RASH_HUMAN
Disease (CSTLO)
---
A
G
13
D
09
UniProt
VAR_068817
G
13
R
RASH_HUMAN
Disease (SFM)
---
A
G
13
R
10
UniProt
VAR_045977
Q
22
K
RASH_HUMAN
Disease (CMEMS)
---
A
Q
22
K
11
UniProt
VAR_045978
T
58
I
RASH_HUMAN
Disease (CSTLO)
---
A
T
58
I
12
UniProt
VAR_045979
Q
61
K
RASH_HUMAN
Unclassified
28933406
A
Q
61
K
13
UniProt
VAR_006838
Q
61
L
RASH_HUMAN
Unclassified
---
A
Q
61
L
14
UniProt
VAR_045980
E
63
K
RASH_HUMAN
Disease (CMEMS)
---
A
E
63
K
15
UniProt
VAR_045981
K
117
R
RASH_HUMAN
Disease (CSTLO)
---
A
K
117
R
16
UniProt
VAR_045982
A
146
T
RASH_HUMAN
Disease (CSTLO)
---
A
A
146
T
17
UniProt
VAR_045983
A
146
V
RASH_HUMAN
Disease (CSTLO)
---
A
A
146
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RAS (A:1-166)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RASH_HUMAN
1-188
2
A:1-166
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gnqa_ (A:)
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(
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(
)
Folds
(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
cH-p21 Ras protein
(104)
Human (Homo sapiens) [TaxId: 9606]
(104)
1a
d1gnqa_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gnqA00 (A:1-166)
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(
)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1gnqA00
A:1-166
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
Nucleic
Backbone
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (33 KB)
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